Gene detail

Database	Orthologs	E value	Annotation
TAIR	AT2G05840.1	6.00E-63	20S proteasome subunit PAA2
NR	XP_006592586.1	6.01E-78	PREDICTED: proteasome subunit alpha type-6-like [Glycine max]
COG	YP_003726305.1	2.00E-25	proteasome endopeptidase complex subunit alpha [Methanohalobium evestigatum Z-7303]
Swissprot	tr\|O48551\|PSA6_SOYBN	1.00E-78	Proteasome subunit alpha type-6
trEMBL	tr\|I1LSZ7\|I1LSZ7_SOYBN	2.00E-78	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}

Transcript Sequence

Protein Sequence

Scaffold	Start	End	Strand
Scaffold00509	52011	55984	-

Gene family	subfamily
--	--

KO	Enzyme	Enzyme ID	pathway	mapID
K02730	PSMA6	EC:3.4.25.1	Proteasome	map03050

biological_process

GO:0006511 ubiquitin-dependent protein catabolic process

GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component

GO:0005839 proteasome core complex

GO:0019773 proteasome core complex, alpha-subunit complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000509s00016403.1	PF10584.4	Proteasome_A_N	9	31	1.30E-15
Glyur000509s00016403.1	PF00227.21	Proteasome	35	84	4.90E-08
Glyur000509s00016403.1	PF00227.21	Proteasome	130	167	1.10E-07

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.904
DRR006520	Root Summer glycyrrhizin high producing strain	23.649
DRR006521	Root Winter glycyrrhizin high producing strain	21.974
DRR006522	Root Winter glycyrrhizin high producing strain	22.848
DRR006523	Root Summer glycyrrhizin low producing strain	17.190
DRR006524	Root Summer glycyrrhizin low producing strain	18.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.912
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.200

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.474
SRR8400027	Control - Root	38.578