Gene detail

Gene detail information of Glyur000509s00016395

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G42550.1	plastid movement impaired1
NR	KEH26956.1	plastid movement impaired protein [Medicago truncatula]
trEMBL	tr\|A0A072UBY1\|A0A072UBY1_MEDTR	Plastid movement impaired protein {ECO:0000313\|EMBL:KEH26956.1}

Sequence

Transcript Sequence

>Glyur000509s00016395.1
ATGGCAGCTGATTACTCTGCCAAGAGAAACTCAAATGTTCAGCTCCTTGAAGAACTAGAGGCTCTAAGTGAATCCCTTTACCAATCACACACCACAGCTAGAAGAACAGCTTCTCTAGCTCTTCCAAGANCCCCAGCTCCTTTTGTCCCATCTGCTGAAGATGACAATGACACTGCAAAAGTTGACAACAACAAAAACAGCAACAAACAACCTCGGTCCAGACGCATGTCCTTGTCTCCATGGACATCAAAACCAAAGCTTGAAGATTCCAATGCACCTTCTACTCAACCAGATACCAAGAAGTTTGATGGCACAGCAAATTCAGCTGACAACAAGAAAGGGATTTGGAATTGGAAGCCTATAAGGGCTCTTTCTCATATTGGAAAGCAGAAACTAAGTTGTTTGTTTTCTGTTGAAGTGGTAACTGCTCAATCCCTTCCTTCCTCAATGAATGGACTGAGGCTTTGTGTTTGTGTTAGAAAGAAAGAGACAAAGGATGGTGCTGTTCATACAATGCCATCAAGAGTTGCTCAAGGAGCTGCAGATTTTGAAGAGACCCTTTTCATAAGGTGCCATGTTTATTGCAACCAACAACAAGATGGTAGTGGGAAGCAGCAGCTTAAGTTTGAGCCAAGACCTTTCTGGATATACCCTTTCGCAGTTGATGCTAAAGAGCTTAACTTTGGAAGAAACTCAGTGGACTTGAGCCAGCTGATTCAAGAATCCATTGAGAAAAACAAGCAAGGCTCAAGGGTTAGGCAGTGGGAAACAAGTTTTAGCTTATCAGGAAAAGCAAAAGGAGGAGAATTGGTTCTGAAACTAGGATTTCAAATCATGGAGAAAGATGGTGGAGTTGAGATATATAACCAGGAAGAGAATTTGAAGCCTAGTAGCAAGTTCAGAAATATCACATCTTCATTTGCTCGTAGACAATCCAAGACATCCTTCAGCATGCCTAATCCTAGAATCACAAGCAGAAGTGATGCTTGGACTCCTTCACAGAAAAGGTTAGCAGAAGATATTCAAGGTATTGATGATTTGGATCTTGATGACCCTAACCAAGTTCAGGATTCCCTTCCTTCTACAAAGAAACTTGATGGTGGCAAAGAGAAGGTGGTGGAGGATTTTGATCTTCCGGAATTTGAGGTTGTTGATAAAGGGGTTGAGGTTCAAGAGAAGAAAGAAGAAGATGAAGGAGAAGGAGAAGGATATGAGAAATCTATTGAAGTGAAATCAGCTTCANGTGAGGTTGTCAAGGAAATAGTGCATGATCAATTGCATCTAACAAGATTAACTGAGCTTGATTCAATTGCNAAGCAGATAAAGGCTCTTGAGTCCATGATGGGAGGTGATAAAAATCAGTTCATGAGAGAAGATGACACAGTATCACAAAGGTTGGATGCTGATGAACAAAATGTGACAAGAGAGTTTCTTCAGATGCTTGAGGATCAAGAGTCAAGAGGATACAAAACCAACCAATCTGAAATTCCACCTTTACAACTTGAAGGGCATGAGAATTCTTCAGCAGGTGGAGAATCCAAAGTGTATCTTCCTGATCTTGGCAAGGGATTGGGTTGTGTGGTTCAAACAAGGGATGGGGGCTACTTGGCATCTATGAACCCTTTAGATAATGCTGTGGCTAGAAATGATACTCNGAAGCTAGCAATGCAGATGTCAAAGCCTTTTGTGTTGACATCATCACATCATTCCCAAAATGGGTTTGAGTTGCTTCAGAATTTGGCTGGCATTGGTCTTGATGAACTCAGCTCTCAAGTTTCCTCTTTGATGCCTATAGATGAACTGAAAGGCAAAACTGCAGAACAGGTTGCTTTTGAAGGCATTGCTTCTGCCATAATTCAAGGTAGAAACAAGGAAGGAGCAAGTTCAAGTGCTGCTAGAATAGTTTCTGCCCTTAAAGGAATGGCAAATGCAATGAGTTCAGGAAGACAAGAAAGGATTTCAACAGGACTTTGGAATGTGGATGAAGAACCTCTCACTGCAGAGAAGATTCTAGCATTCACAATGCAGAAGATTGAGTTCATGGCTGTTGAGGCCTTGAAAATCCAAGCTGACATGGCTGAGGAAGAAGCTCCATTTGATGTTTCTGCACTCAGCACAAAGGAAGGAAACAAAGAAGACAAAGATCCATTGAGTTCTGCTATTTCACTTGAGGATTGGATCAGAGACCAAAGCTACATTAACAATACTACAAGTTCTGATGATGATGAACCATCAAATATCACACTGATATTTGTTGTCCAATTGAGGGATCCAATAAGACGGTTTGAAGCAGTTGGGGGTCCTGTGATGGTGCTAGTTCATGCAACAAGTGTGGACACAAAGGGTAGTAGTAGNGATAACTATGAAGATGATGATGGGGAGAAAAGGTTCAAAGTAACAAGCATGCATGTGGGAGGCTTCAAGGTGAGGAATGGTAAAAGGAAGAGTGGTTGGGACAGTGAGGAGCAAAGGGTAACTGCAATGCAATGGTTGGTTGAATATGGGTTGGGAAAGGCAGGGAAAAAGGGAAAGCATGCATTGGGAGCAAAAGGGCAAGACTTGTTGTGGAGCATTTCTTCAAGAATCATTGCTGACATGTGGCTGANAACCATGAGAAATCCAGATGTCAAACTTGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00509	20390	23029	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000509s00016395.1	PF10358.4	NT-C2	129	282	6.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.069
SRR1783600	control	0.034
SRR1783602	moderate drought stress	0.115
SRR1811619	moderate drought stress	0.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.698
DRR006520	Root Summer glycyrrhizin high producing strain	0.692
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.012

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.515
SRR2868004	Drought Stress (root)	1.380
SRR2967015	Control (root)	0.494

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.047
SRR9715740	Leaf	12.777
SRR9715741	Leaf	10.333
SRR9715739	Root	0.019
SRR9715742	Root	0.125
SRR9715743	Root	0.054

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.025
SRR8749028	MeJA induced 9h	0.330
SRR8749029	MeJA induced 9h	0.147
SRR8749030	Uninduced	0.145
SRR8749031	Uninduced	0.656
SRR8749032	Uninduced	0.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.662
SRR8400027	Control - Root	0.573