Gene detail

Gene detail information of Glyur000506s00021903

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30110.1	0	heavy metal atpase 2
NR	XP_004507887.1	0	PREDICTED: putative cadmium/zinc-transporting ATPase HMA4-like [Cicer arietinum]
COG	YP_001099880.1	6.00E-129	cadmium-transporting ATPase [Herminiimonas arsenicoxydans]
Swissprot	tr\|Q9SZW4\|HMA2_ARATH	0	Cadmium/zinc-transporting ATPase HMA2
trEMBL	tr\|K7LWU0\|K7LWU0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G00630.2}

Sequence

Transcript Sequence

>Glyur000506s00021903.1
TGCGAATTGTGTCCTATCCGAATCATAGTGCTGCATCTTTTGTTCTTTCCCTTTTATGCTCCACTAAGAGTTTGCCTACTTAAACCGGCAATCCTCTAACACTGCTTCATATCATTTAGCAACACCAAGAGTTTTTTTTTCTCTCTTTGTGCTCACTCTCAAGGTGAATTCCTAAGCTAGCTATTGGAGGAAGTGGTTAGTATAAATGTCTTCCCAGGAGAAGAAGAAGTTGCAGAAGAGCTACTTCGATGTGCTGGGTTTGTGTTGCTCTTCAGAGGTGCCACTGATTGAGAACATCCTCAAACCTCTCGAAGGGATTAAGGAGGTTTCTGTCATCGTCCCATCACGAACTGTCATCGTTGTCCATGACAGCCTCGTCATTTCACAACTGCAAATTGTTAAGGCTCTGAATCAAGCAAGACTNGAAGCGAACGTTAGAGTGTATGGGGACGAAAAGCACCAAAAGAGATGGCCAANNCCATACTCAATTGCTTCTGGTTTGCTACTTCTGCTTTCGTTTCTCAAGTTNGTGTACTCTCCGTTGAAGTTTCTTGCCCTTGGAGCTGTTGCTGCGGGCGTCTTTCCCATCATCTTAAAAGCTATCGTTTCCATTCGGAACTTTAGATTTGACATAAACATCCTCGTCATCATAGCAGTTATTGGGACAATTGCTATGAACGATTATTTGGAAGCCGGTACCATTGTTTTCCTCTTCTCAGTTGCAGAATGGCTAGAGTCAAGGGCGAGCCACAAGGCAAATGCAGTGATGTCATCGTTGATGAACATAGCTCCTCAAAAGGCAGTGATAGCTGAAACAGGAGAGGTTGTGGACGCTGATGAGGTGAAAGTAAACACCCTCCTAGCAGTTAAAGCAGGCGAGGTGATACCCATTGATGGGGTCGTTTTGGATGGTAACTGTGAAGTTGACGAGAAAACATTAACTGGGGAATCATTCCCAGTTGCCAAACAAAAAGATTCCATTGTTTGGGCTGGCACAATCAATTTAAATGGTTATATTAGTGTGAAGACTACTGCACTAGCTGAAGATTGTGTGGTGTCTAAAATGGCAAANCTTGTGGAAGAGGCTCAAAACAGCAAAACCAGCACCCAAAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGCTGTTGTAGTCATATCAACTCTGGTAGCGGTGGTTCCAATTGTGTTAAAGCTACATAACGAGAAATACTGGCTTCACTTTGCACTTGTTGTTTTGGTAAGTGCATGCCCGTGTGCACTTATCCTTTCCACACCAGTTGCAACATTTTGTGCTTATACCAAAGCAGCTACATCGGGTCTTCTCATCAAAGGGGGTGATTATCTTGAAACACTTGCAAAGATTAAGGTCATGGCTTTTGACAAAACGGGTACCATAACAAAGGGTGAATTTGAAGTGACAAATTTTCAGTCTCTTTCAGATGATATTGATTCCAACACATTGCTTTACTGGGTGTCAAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGCAGCAATTGTTGATTATGGAAGGTCTCTCTCCATTGAACCAAAGCCAGAAAAGGTGACCGAATTTGAAAATTTTCCTGGAGAAGGAATCTGTGGAAAAATTGAAGAGAGGATTCTTTACATTGGAAACAAAAAAATAGCCACAAGAGCAGGGTCAGAAACAGTTCCTACCTTACAAGGTGAAGTTCAAAAAGGAAAGACCACTGGCTACATATACTCCGGATCAACCCCAGTTGGAATTTTCTCTCTATCTGATACTTGTCGATCCGGGGTTCACGAGGCAGTAAGGCAGCTGAAGTTATTGGGAATCAAAACTGCTATGCTCACTGGAGATTGTCAATCAGCTGCAATGCAAGCACATGAGCAGCTAGATCATGCCCTGGAATTAGTCCATGCAGAACTTCTGCCAGANGACAAGGTAAAAATCATCTCTGAATTTAAAAAGGAAGGCCCAACAGCCATGGTTGGAGATGGTTTAAATGACGCGCCTGCATTGGCTATGGCCGATATCGGAATCTCAATGGGGATTTCAGGTTCTGCACTGGCAAGTGAGACAGGCCATATAATTCTCATGTCAAATGACATTAGGAAGATACCAGAAGCCATTAAGCTTGCAAGGAAATCTCGGAGGAAAGTGATAGAAAATATTGTTTTGTCAGTCATTACTAAGGTTGCAATTCTCGGTTTGGCCATTGCTGGCCATCCAATTGTTTGGGCAGCAGTTCTTGCTGATGTTGGAACATGTCTCTTGGTCATCTTAAACAGCATGTTACTTCTGCAAAGTGGACACAAGCATGGAGGGAAATGTTGTAGACCTTCCACTCAATCTCATATGCACAAAAATGGATGTGGTGGTTCATCTCATCATGATCATCATCACCATCCACATCAACATAAACATCAGCATCATAGCCNTAAGAGTTGCTGCTCAGACAAGACAAAAAGGGTGTCTCAGCCCCAGAAGTGTGCTTCTGAGACATGTTCCTCAAAGTGTCCACCCTGCCCTTCAAATCCAAGTTTAGGTGGAACTATTAACCATCATAGTATCATGGAGAGTCATGATCAATGCAAGGGAAGTCATGAATTCCATGAATCAGATCACTGTCATGGAGCCCATGAGCATCATGATATTGAAAACAAGGGTTGTTCAGATTCACACAATTTGATTCTAAATGCAGAAGATATTGATGCAGCTTCAATAAACAGGCACGGTAGTTGTATGGAACACAAGTCCCATGGGACAAAACACTGCCACAGCCAAAACAATGACATGGTTCCTCATGATAGCACTTCACTTGGTTCTCCTCCTTGCCATCCCACTCTCTGTTGTCAAAAAGAAAAACAACCATCTACTACTGAACATTGCCACTTGATCCATGGTTGTGAAAACCTGAAAGACCATCATGGATCCATTCATGACATTCAGAACCAAAAATCAGATTGTCATTCAGTTGAAAGTGAAATATCAATTGACATCATCAATGAGCATATTGTTGAATCAGCCCACGAGACACAATGTTGCTCAAGTTTGGCAGAGAAAGAAAAAGGTTCTTGTAATAAAGGCTGCTCCAACACATGTGATCAGAAATTGCCTGTTGTGTGTGGCTGTGACTGTGAGGGTTTAAATGAGAGAGAAGTTAGTGCATGTTGCAGGAATGAGGGATCCTCAAAGGAATCCTCTATTGTGCAAGCATTGGACAAGAGGGAATTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGGCAAGCATGGACACTCAGGGGCTTGTTTTGTAGGAGGTTTATCAGAAATCATCACAGAATAG

Protein Sequence

>Glyur000506s00021903.1
MSSQEKKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDSLVISQLQIVKALNQARLEANVRVYGDEKHQKRWPXPYSIASGLLLLLSFLKXVYSPLKFLALGAVAAGVFPIILKAIVSIRNFRFDINILVIIAVIGTIAMNDYLEAGTIVFLFSVAEWLESRASHKANAVMSSLMNIAPQKAVIAETGEVVDADEVKVNTLLAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSIVWAGTINLNGYISVKTTALAEDCVVSKMAXLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVVPIVLKLHNEKYWLHFALVVLVSACPCALILSTPVATFCAYTKAATSGLLIKGGDYLETLAKIKVMAFDKTGTITKGEFEVTNFQSLSDDIDSNTLLYWVSSIESKSSHPLAAAIVDYGRSLSIEPKPEKVTEFENFPGEGICGKIEERILYIGNKKIATRAGSETVPTLQGEVQKGKTTGYIYSGSTPVGIFSLSDTCRSGVHEAVRQLKLLGIKTAMLTGDCQSAAMQAHEQLDHALELVHAELLPXDKVKIISEFKKEGPTAMVGDGLNDAPALAMADIGISMGISGSALASETGHIILMSNDIRKIPEAIKLARKSRRKVIENIVLSVITKVAILGLAIAGHPIVWAAVLADVGTCLLVILNSMLLLQSGHKHGGKCCRPSTQSHMHKNGCGGSSHHDHHHHPHQHKHQHHSXKSCCSDKTKRVSQPQKCASETCSSKCPPCPSNPSLGGTINHHSIMESHDQCKGSHEFHESDHCHGAHEHHDIENKGCSDSHNLILNAEDIDAASINRHGSCMEHKSHGTKHCHSQNNDMVPHDSTSLGSPPCHPTLCCQKEKQPSTTEHCHLIHGCENLKDHHGSIHDIQNQKSDCHSVESEISIDIINEHIVESAHETQCCSSLAEKEKGSCNKGCSNTCDQKLPVVCGCDCEGLNEREVSACCRNEGSSKESSIVQALDKREFGGCCKSYMKECCGKHGHSGACFVGGLSEIITE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00506	133003	141872	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0030001 metal ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0019829 cation-transporting ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000506s00021903.1	PF00122.15	E1-E2_ATPase	166	384	4.00E-47
Glyur000506s00021903.1	PF00702.21	Hydrolase	388	606	2.20E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.902
SRR1783600	control	12.017
SRR1783602	moderate drought stress	8.805
SRR1811619	moderate drought stress	8.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.018
DRR006520	Root Summer glycyrrhizin high producing strain	17.583
DRR006521	Root Winter glycyrrhizin high producing strain	0.335
DRR006522	Root Winter glycyrrhizin high producing strain	0.327
DRR006523	Root Summer glycyrrhizin low producing strain	22.800
DRR006524	Root Summer glycyrrhizin low producing strain	20.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.223
SRR2868004	Drought Stress (root)	44.138
SRR2967015	Control (root)	38.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.288
SRR9715740	Leaf	3.859
SRR9715741	Leaf	4.401
SRR9715739	Root	0.929
SRR9715742	Root	13.420
SRR9715743	Root	10.780

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.708
SRR8749028	MeJA induced 9h	7.327
SRR8749029	MeJA induced 9h	3.482
SRR8749030	Uninduced	0.551
SRR8749031	Uninduced	0.181
SRR8749032	Uninduced	0.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.109
SRR8400027	Control - Root	12.353