Gene detail

Gene detail information of Glyur000506s00021894

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57280.1	6.00E-96	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	NP_001241182.1	4.74E-172	uncharacterized protein LOC100801198 [Glycine max]
COG	YP_008054292.1	6.00E-08	methyltransferase type 11 [Salinarchaeum sp. Harcht-Bsk1]
trEMBL	tr\|C6TI19\|C6TI19_SOYBN	2.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G00680.1}

Sequence

Transcript Sequence

>Glyur000506s00021894.1
GTGTGGGTTTAGGGTTTTTGGCGGTTGCGATGGCGTCGAGACCAGAGGTGGTTGCGCCACCGGAGATATTCTACGACGATGCCGAAGCACGCAAGTACACCTCTTCTTCCCGTATTATTCAAATTCAGAGAGAGCCATGGAGTTACCTCGCTTTGCCGGATGACGGCGTTCCTAAATTTCTTCTTGACATTGGTTGCGGTTCGGGTCTTAGCGGTGAGACACTCTCAGAGAATGGACACCATTGGATTGGTCTTGATATTTCACCCTCAATGCTTAATATTGCATTGGAGCGAGAGGTTGAGGGAGACCTTTTACTTGGTGACATACTGACATGGGGTTTAGGGCTTCGTCCTGGAGTAATTGATGGGGCCATCAGTATATCTGCTGTTCAGTGGTTATGTAACGCTGATAAATCCTCTCACAACCCTCGATTAAGATTGAAGGCTTTTTTTACATCTTTATACAGATGCTTGGCAAACGGTGCTAGAGCAGTATTTCAAGTGTATCCTGAAAATCTAGACCAGCGTGAATTGATATTGAATGCTGCAATGCATGCTGGATTTGCTNGGGAGGAGATAGAGTTTCTTGTTCTCACATGTGGTCAACGATCAATAAATGCATCCGTGGCCAAAGGTAAAGATGAAGACGAGGAGTGTTGCTCAGATGATGACAATGAAGATGAAGAAAATCAGACAGTATGTATCTCAGACAGGCATAGACCCCGAAAGAAACAGAAAAAGAATAAGAGCGGCAAGGGAAAGGATTGGATAGTGAGGAAGAAGGAGCAAATGAGAAGAAGAGGAAATGTTGTTCCTCCAAATACCAAGTACACGGGTCGGAAACGGAAAGATCGCTTTTGATATTGATTGGCATTTGCCTCAAGAGTCGTGCATATACTGGTTGATCGCCATATTTATTATTTGTTAATGGAGATTATGAAGTGCATCTTGCTCGCTCGGGTCCCTGAAGGAATAACTCTTACATGTGCGTTCCCGCACTCAAATCGGTTCGGTGGAGGCTTGCAGGATATTTTTGTGTACTAACTATATGGTATGTTTGAATAACAGTTATTTTTGGGATCCTGAGCAATTTGCATAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00506	74697	78155	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000506s00021894.1	PF08241.7	Methyltransf_11	52	155	1.00E-08
Glyur000506s00021894.1	PF12589.3	WBS_methylT	188	275	4.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.055
SRR1783602	moderate drought stress	0.034
SRR1811619	moderate drought stress	0.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.081
DRR006520	Root Summer glycyrrhizin high producing strain	0.088
DRR006521	Root Winter glycyrrhizin high producing strain	0.776
DRR006522	Root Winter glycyrrhizin high producing strain	0.791
DRR006523	Root Summer glycyrrhizin low producing strain	7.780
DRR006524	Root Summer glycyrrhizin low producing strain	7.109
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.016
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.314

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.698
SRR2868004	Drought Stress (root)	7.784
SRR2967015	Control (root)	6.899

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.289
SRR9715740	Leaf	6.663
SRR9715741	Leaf	4.002
SRR9715739	Root	0.095
SRR9715742	Root	0.750
SRR9715743	Root	0.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.166
SRR8749028	MeJA induced 9h	4.386
SRR8749029	MeJA induced 9h	3.389
SRR8749030	Uninduced	3.343
SRR8749031	Uninduced	2.434
SRR8749032	Uninduced	2.707

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.238
SRR8400027	Control - Root	4.647