Gene detail

Gene detail information of Glyur000506s00021882

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G18960.1	H(+)-ATPase 1
NR	KHN22686.1	Plasma membrane ATPase 4 [Glycine soja]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q03194\|PMA4_NICPL	Plasma membrane ATPase 4
trEMBL	tr\|I1MSP4\|I1MSP4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06930.1}

Sequence

Transcript Sequence

>Glyur000506s00021882.1
ATGGGTGTGGGTTCCGACGGACTTCCACGTGTCGTCGTCACACTGGATAAGTGTGTCCAGCTGTCATGCGTGACTGGACGACACGTGGCAGAACGTATTCCTGTTGAGGAAGTGTTTGAGCAATTGAAATGTACCAAAGAAGGATTGTCCTCGGAGGAAGGAGCCAGTCGGCTTCAAATATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAATTACTCAAGTTTCTTGGGTTTATGTGGAATCCTTTGTCATGGGTCATGGAAGCTGCTGCTATAATGGCAATTGCTCTTGCAAATGGTGATAACAAGCCCCCGGATTGGCAAGATTTTGTGGGTATTGTTTGCTTGTTGGTGATCAACTCCACCATCAGTTTCATTGAGGAAAACAATGCCGGTAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCAAAGACAAAGGTTCTTAGAGATGGTAAATGGACTGAGCAAGAAGCTTCAATTCTAGTCCCTGGAGACATCATAAGCATCAAACTAGGTGATATCATCCCTGCTGATGCACGTCTTCTTGAGGGTGATCCTTTAAAGATTGATCAATCTGCTTTGACTGGAGAATCACTTCCTGTCACTAAGAATCCTGGGGATGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACCGGTGTCCACACATTTTTCGGGAAAGCAGCTCACTTGGTGGATAGTACCAACCAAGTTGGACATTTCCAGAAGGTGCTAACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCACCGCAAGTACCGAGACGGAATTGACAACCTTTTGGTCCTCTTGATTGGAGGAATTCCAATTGCTATGCCCACTGTGTTGTCTGTAACAATGGCCATTGGTTCTCACAGGCTCTCTCAGCAAGGTGCTATCACCAAACGAATGACTGCTATTGAAGAAATGGCTGGCATGGATGTCCTGTGTAGCGACAAGACGGGTACACTAACACTTAACAAACTGAGTGTTGACAAGAATTTGATTGAGGTCTTTGCAAAGGGTGTGGACAAGGAACAGGTGATGCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAAGATGCAATAGACGCTGCCATTGTTGGAACGCTTGCTGATCCAAAAGAGGCAAGGGCTGGGATAAGAGAGGTGCACTTCTTTCCATTTAACCCCGTTGACAAGAGAACTGCTTTAACTTACATTGATGCTGATGGAAATTGGCACCGGGCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTGTGTAACCTCAGGGATGATACTAAGAAGAAGGTTCATGCCATTATTGACAAGTTTGCAGAAAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAGGTGCTGGTGGTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTTGACCCCCCTAGGCATGACAGCGCTGAAACTATTCGGAGGGCTCTACATCTTGGTGTAAATGTCAAGATGATTACTGGTGATCAACTTGCCATAGCAAAGGAGACTGGCCGGAGGCTTGGGATGGGAACTAATATGTATCCATCTGCTTCCTTGCTTGGTCAACACAAAGATGAAAGTATTGCCGCCCTTCCAGTCGAAGAGCTTATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACCGGAGATGGTGTGAACGATGCTCCAGCTTTGAAGAAGGCTGATATTGGTATCGCTGTTGCTGATGCTACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACAGAACCTGGATTGAGTGTTATCATCAGTGCAGTCTTAACTAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGATATATGCAGTGTCTATCACTATCCGTATAGTGTTTGGTTTCATGTTCATTGCACTAATCTGGAAATTTGACTTCTCTCCTTTCATGGTCTTGATTATTGCCATTCTAAATGATGAAATATTTGCTACTGGGATTGTTCTTGGAAGTTACTTGGCACTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACCACCTTCTTCCCTGACAAATTTGGAGTTAGACACCTGGTACACGATGAAATGATGTCTGCTTTGTATCTACAAGTCAGTATAGTTAGCCAGGCTCTGATATTCGTAACCCGTTCCCGTGGTTGGTCCTTTATTGAACGCCCTGGAATGCTATTACTCTGTGCTTTTGTCATTGCTCAGCTGATTGCTACACTCATAGCAGTATATGCTGACTGGGGTTTTGCAAAGGTCAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTATTGTCTTCTATTTTCCACTTGACATCATGAAGTTTGCCATCCGCTACATATTAAGTGGCAAGGCTTGGTTAAATATGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTACGGTAAAGAGGAGAGGGAAGCTCAGTGGGCTCATGCTCAGAGGACCCTTCACGGTCTTCAACCACCGGAAACTTCTGGCGTTTTCAATGAAAAGAGCAGCTACAGGGAACTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTTAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTCTGGACATTGATACAATCCAGCAGCACTACACAGTGTGAAAAGCACTCTGAAATTGTAGATAGCAGCAGAAAGGCCAAAAATTCAACGGGATACCTGAAACAATAAGGGTCAAAAGAGAAGGCCTATTCAATGCTCTTACTAGGAAGGGAGAGTATAGCTTTCCCATTCTGTTTACTTTTTTCCGTGTACTTTCAGTTCTGGCTAAATGGGTGTCCTTGCTTTCTTTTTACTTGGATGATAGGAGCAAAGTAGTACTAGTTTCAGTCCTTGCTTTTCTTATGGTTTTGACTTTTGGGTGCTTCCTCATTTCTTTTCTCTCCATTTTAATTGCATGCCACATTAAGATGGCAGTGATCAGATGATGTCAATATTGGGATTTTTTTAAGGGGCTGAATAAGAGATTTTGGAATGGTTTTATGGCATCATGCAAAATTAAAACCTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00506	4272	13343	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006754 ATP biosynthetic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0016887 ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000506s00021882.1	PF00690.21	Cation_ATPase_N	32	95	1.20E-14
Glyur000506s00021882.1	PF00122.15	E1-E2_ATPase	114	335	1.50E-58
Glyur000506s00021882.1	PF00702.21	Hydrolase	339	616	7.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.805
SRR1783600	control	52.205
SRR1783602	moderate drought stress	70.885
SRR1811619	moderate drought stress	70.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.442
DRR006520	Root Summer glycyrrhizin high producing strain	81.032
DRR006521	Root Winter glycyrrhizin high producing strain	168.869
DRR006522	Root Winter glycyrrhizin high producing strain	166.128
DRR006523	Root Summer glycyrrhizin low producing strain	78.983
DRR006524	Root Summer glycyrrhizin low producing strain	79.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	68.764
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	388.740
SRR2868004	Drought Stress (root)	454.039
SRR2967015	Control (root)	467.308

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	195.394
SRR9715740	Leaf	228.889
SRR9715741	Leaf	242.741
SRR9715739	Root	118.369
SRR9715742	Root	185.076
SRR9715743	Root	175.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.349
SRR8749028	MeJA induced 9h	170.390
SRR8749029	MeJA induced 9h	84.732
SRR8749030	Uninduced	305.422
SRR8749031	Uninduced	199.865
SRR8749032	Uninduced	216.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	194.952
SRR8400027	Control - Root	130.698