Gene detail

Gene detail information of Glyur000505s00021223.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38530.1	0	tryptophan synthase beta type 2
NR	KHN15260.1	0	Tryptophan synthase beta chain 2 [Glycine soja]
COG	YP_005535112.1	0	tryptophan synthase subunit beta [Amycolatopsis mediterranei S699]
Swissprot	tr\|P25269\|TRBP2_ARATH	5.00E-26	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|I1LWZ0\|I1LWZ0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G07130.1}

Sequence

Transcript Sequence

>Glyur000505s00021223.1
GACTCGTAATACATACTAAACCTGTTTTATTTTTGTCTTTAGTGCCGCAGGAGTTGACTTCAGAGTCTGCATCTTCCTGCAAAGGTTTAAGATACTACTACCTACCTCTGTAACTCTTCTCAACTTAGCCATTCATAGTTTGATAATTGAAGATCCAAAAATCACAGAGAAAAATGAAAGCTGCTACTACTTCGCTTCCTACTACATCACCTTGCTTCTACTCTAAAGTTGAAAAGCAATGGCCTCAAAGGTTTGCCTTGAGTGTAAGGCCAATGCATCTGAGGCTTTCAAATGCCTGCAAAGTGAGAGCTACTTTGGATGCTAATAATAACAAATCAATTGGAATCCCCAACCAATGGTACAATCTAATAGCAGATCTCCCAGTTAAACCACCTCCACCATTGCATCCCAAGACTTATCAACCAATCAAACCAGAAGACTTGTCCCCTCTCTTTCCTGATGAGTTAATCAGACAAGAGGTGACCACTGACAGATTCATAGACATTCCAGATGAAGTTCTTGATCTTCTTGATACACCTGCAAGAATCTACTACAAGTATGAGGGTGTGAGCCCCGCCGGATCGCACAAACCGAACTCTGCTGTTCCACAAGCTTGGTATAATTTACAAGAAGGTGTCAAAAATGTNGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTAGCCTTTGCATGCAGCATATTTGGCCTTGGATGTGAGGTGTGGCAAGTACGCGCTTCTTACGATTCAAAACCGTATCGGAGATTGATGATGCAAACTTGGGGTGCAAAGGTACACCCATCTCCATCTATGCTTACTGAGGCTGGTCAGAGAATGCTCCAAAAGGACCCATCAAGCCCAGGGAGTTTAGGCATNGCTATATCAGAAGCTGTGGAGGTTGCTGCTAAAAATCCTGATACCAAGTACTGCTTGGGGAGTGTACTCAACCATGTTTTACTCCACCAAAGTGTTATTGGAGAAGAGTGCCTTAAACAAATGGAAGCTATTGGGGAAACCCCAGATGTCATCATAGGATGTACTGGTGGTGGCTCCAACTTTGCAGGACTTAGCTTTCCGTTCATTAGAGAGAAACTCAATAACAAAATCAACCCTGTTATAAGAGCAGTTGAACCTGCAGCATGCCCTTCATTAACAAAAGGGATATACACATATGATTATGGTGATACAGCTGGGATGACTCCATTGATGAAAATGCATACACTTGGACACAACTTTTTGGGCTTAATGGAAGCAATTTCAATTCCACAAACTGAATGTTTTCAAGGTGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCACCTGAACCAACTCATGCCATTGCTGCAACCATTAGGGAAGCTATTCAATGTAGAGAGAGTGGAGAGGCAAAGGTTATTCTGACAGCAATGTGTGGACATGGCCATTTTGACCTTCCAGCTTATGAGAAGTATTTGCAAGGGAATATGGTTGACCTCTCATTCTCAGAGGACAAGATGAAAGCTTCACTGGCCAATATTCCTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00505	108052	111748	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06001	trpB	EC:4.2.1.20	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0000162 tryptophan biosynthetic process

GO:0006568 tryptophan metabolic process

molecular_function

GO:0004834 tryptophan synthase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000505s00021223.1	PF00291.20	PALP	121	417	2.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.325
SRR1783600	control	21.921
SRR1783602	moderate drought stress	11.101
SRR1811619	moderate drought stress	11.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.453
DRR006520	Root Summer glycyrrhizin high producing strain	4.663
DRR006521	Root Winter glycyrrhizin high producing strain	5.177
DRR006522	Root Winter glycyrrhizin high producing strain	5.200
DRR006523	Root Summer glycyrrhizin low producing strain	2.253
DRR006524	Root Summer glycyrrhizin low producing strain	2.093
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.725

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.395
SRR2868004	Drought Stress (root)	11.887
SRR2967015	Control (root)	12.164

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.050
SRR9715740	Leaf	35.720
SRR9715741	Leaf	54.826
SRR9715739	Root	12.834
SRR9715742	Root	23.573
SRR9715743	Root	20.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.298
SRR8749028	MeJA induced 9h	27.241
SRR8749029	MeJA induced 9h	10.447
SRR8749030	Uninduced	8.141
SRR8749031	Uninduced	5.119
SRR8749032	Uninduced	3.293

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.901
SRR8400027	Control - Root	23.404