Gene detail information of Glyur000505s00021217 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02450.1 | 7.00E-170 | cell division protein ftsH, putative |
| NR | XP_006593714.1 | 0 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like isoform X1 [Glycine max] |
| COG | YP_002250585.1 | 9.00E-76 | cell division protein FtsH [Dictyoglomus thermophilum H-6-12] |
| Swissprot | tr|Q9FIM2|FTSH9_ARATH | 8.00E-64 | ATP-dependent zinc metalloprotease FTSH 9, chloroplastic (Precursor) |
| trEMBL | tr|I1LWY7|I1LWY7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G07100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00505 | 60714 | 65182 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000505s00021217.1 | PF06480.10 | FtsH_ext | 160 | 300 | 5.30E-10 |
| Glyur000505s00021217.1 | PF00004.24 | AAA | 387 | 501 | 1.70E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.245 |
| SRR1783600 | control | 5.258 |
| SRR1783602 | moderate drought stress | 7.262 |
| SRR1811619 | moderate drought stress | 7.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.506 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.810 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.400 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.141 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.385 |
| SRR2868004 | Drought Stress (root) | 8.039 |
| SRR2967015 | Control (root) | 9.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.207 |
| SRR9715740 | Leaf | 30.885 |
| SRR9715741 | Leaf | 19.159 |
| SRR9715739 | Root | 2.449 |
| SRR9715742 | Root | 10.683 |
| SRR9715743 | Root | 7.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.599 |
| SRR8749028 | MeJA induced 9h | 6.925 |
| SRR8749029 | MeJA induced 9h | 5.301 |
| SRR8749030 | Uninduced | 3.445 |
| SRR8749031 | Uninduced | 1.775 |
| SRR8749032 | Uninduced | 2.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.413 |
| SRR8400027 | Control - Root | 12.446 |