Gene detail

Gene detail information of Glyur000505s00021210.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16000.1	0	NSP-interacting kinase 1
NR	XP_003555046.1	0	PREDICTED: protein NSP-INTERACTING KINASE 1 isoformX1 [Glycine max]
COG	YP_004775215.1	5.00E-21	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|I1N6J0\|I1N6J0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G05200.1}

Sequence

Transcript Sequence

>Glyur000505s00021210.1
GTTTTAAAGGCCATTCACATATTCTCTTGAATATTACAAAAACCTGACTCAGTGACAGGCATGCTAGTTCCCTTTAGATTATCCTATTCATGAACCTGTCTTTTTTTTTTCTTGGGTCTGTCTGACACAAGATTTTTGGTGAATGTGATTCTGGCAAGGATAGCAGGGAAAGAAGGGTTTCTTTCTTGTTTTGAAAAACCACTGCAAAAGAAAGAAAACCCATTTGAGAACTGTTGTTAGTAACATTTTCAATATCTATTATCCTTTAGTACAATCAGGTGTTCACAGTACTTGTAAGTAACTGGTTCTTGGAAATTCCACTTGAATGGAGATGCCACCAAAAGGAGAAGCTGTTATATATTTTGTGTCATTGTTCTTCTGGTTTTGTAGCTCTGCAAGTGCTTTGCTTTCTCCCAAGGGAATAAACTTTGAAGTGCAAGCTTTAATAGGCATAAAAGCTTCTCTAGTGGATCCTCATGGCATTTTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGAATATGGTCACTTGTTCCCCTGAGAACCTTGTCNTTAGCCTGGGTATTCCTAGTCAAAATCTATCTGGTACTCTATCTCCAAGCATAGGAAACCTAACCAATCTTCAGTCTGTGGTGCTACAGAATAACAACATGACTGGACCAATCCCTTCAGAGCTAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTTGGTCATCTGAGAAACCTCCAGTACCTGAGGCTTAACAATAACAGTTTATCTGGTGAATGCCCTGAGTCACTGGCAAACATGGCACAGCTTGCTTTTCTTGACTTGTCATTCAACAATCTGAGTGGCCCTGTACCCAGAATTTTGGCCAAATCATTCAGTGTTGTTGGAAACCCCTTGGTCTGTGCTATAGGGAAAGAAACAAACTGCCCTGGGATGACACTGATGCCTATGTCCATGAACTTAAACAGTACTGAGGATGCTTTACAATCTGGCAGATCAAAAGCTCACAAAATGGCCATTGCCTTTGGTTTGAGCCTGGGATTCCTTTGCTTGATTGTCCTTGACCGGCATCATGAAGAAGTCTATCTTGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAAATTGCCACTAACAACTTCAGTAACAAAAACATTCTGGGAAAGGGTGGTTTTGGAATTGTGTACAAAGGAGTTCTCTCAGATGGCACTCTTGTGGCTGTAAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATACAGTTTCAGACTGAAGTTGAAATGATCAGCTTGGCGGTGCACCGGAACCTTCTCAAACTCTATGGATTTTGTATGACACCAACAGAAAGGCTTCTACCAGTTTTGGATTGGGGCACAAGGAAGCAAATTGCCTTAGGAGCAGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAAGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTAGTTGGGGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGANTCACATGTCACGACCGCGGTGAGGGGCACGGTGGGGCATATCGCGCCGGAGTATCTCTCCACAGGACAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGAATTCTGCTTCTTGAGTTGATCACAGGCCTGAGGGCCCTGGAATTTGGAAAGGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGATCTGAAGAGCAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCACTCTTGTGNACACAATATCTTCCAGGCCACAGACCCAAAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGGCTAGCAGAGAAATGGGAAGCTTCTCAAAGTAGTGCTTCTTCTGACACCACAAAGTGCAAACCACACGAGTTATCTTCATCAGATCGGTATTCTGATCTTACTGANGATTCTTCATTGTTAGTCCAGGCCATGGAGCTCTCTGGTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00505	30404	34752	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000505s00021210.1	PF08263.7	LRRNT_2	35	73	3.60E-12
Glyur000505s00021210.1	PF13855.1	LRR_8	124	184	1.50E-08
Glyur000505s00021210.1	PF00069.20	Pkinase	287	478	7.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.052
SRR1783600	control	4.112
SRR1783602	moderate drought stress	4.072
SRR1811619	moderate drought stress	4.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.127
DRR006520	Root Summer glycyrrhizin high producing strain	8.506
DRR006521	Root Winter glycyrrhizin high producing strain	0.262
DRR006522	Root Winter glycyrrhizin high producing strain	0.250
DRR006523	Root Summer glycyrrhizin low producing strain	3.771
DRR006524	Root Summer glycyrrhizin low producing strain	3.708
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.433
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.420

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.685
SRR2868004	Drought Stress (root)	28.285
SRR2967015	Control (root)	24.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.566
SRR9715740	Leaf	12.530
SRR9715741	Leaf	7.551
SRR9715739	Root	1.161
SRR9715742	Root	6.377
SRR9715743	Root	5.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.840
SRR8749028	MeJA induced 9h	0.027
SRR8749029	MeJA induced 9h	0.165
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.037
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.643
SRR8400027	Control - Root	20.309