Gene detail

Gene detail information of Glyur000505s00021205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22910.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_003554951.1	0	PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Glycine max]
COG	YP_002466702.1	2.00E-91	ATPase P [Methanosphaerula palustris E1-9c]
Swissprot	tr\|Q9LIK7\|ACA13_ARATH	0	Putative calcium-transporting ATPase 13, plasma membrane-type
trEMBL	tr\|I1N6I6\|I1N6I6_SOYBN	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000505s00021205.1
ATGTCAATTACCATGCTCACAACGAACTTGAAGCGCATTGAGACACTTCTCAATGCACCAAACACCATTACTGAACCCAACAAAAAGAGATGGCACACTGCATTCATGGCCATCTATTGTTCTCGAGCTCTCATGTCACACTTCACCACTCCGCTCAACAAAACCAAAGAAAAATTCAAAATCTCACCTTTACCATCATTCACCGTGGTTGATTTGAATCCACCCAACTCCTTCACAATTGACCAAGCAACTCTCACAGAGATTACAGGAACACTCACTTTGAACCAGATGAAGGTGACCAAGTTTTGGCTTGGACTAGAGCCTGTGGTGGAAAGTGCATACTCAGAAATTGCACCATTTGTTCTTCAATTGATCAAAGAAGGAGTGGCTCTTAACACAACTGGTGGGGTGCACAACAGCAACAAGAACAACAAGTCTTCTTCTGAAGAATCAGGTAATTCTGAATTTGAGTTTTCAGGTAGTCCAACAGAAAAGGCAATCTTATCTTGGGCTGTTTTGGAATTGAACATGGACATGGATCACTTGACAAAGAGCTGTTCAATCCTTCAAGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGGGTTTTGCTGAGAAGGAATGTAGACAACACGGATCTTGACAAAGATAGCATGTTGGAATTCGAACGCATTATTCAAGGTATGGCGGCTAGTAGTCTTCGTTGTATCGCTTTGGCACATGCAGAAGTGACAGCAGAAGAAGAAGAGCTTGGAGATGGTGATGAAATAGAAGGCAACAAAATGGTGAAAGTCAAAGACAATGATTTAACATTGTTAGGACTTATTGGTATTAAAGATCCATGTCGTCCGGGGGTGAAGACAGCTGTGGAAGCTTGCCAACGTGCNGGGGTGAACGTGAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCTATAGCTACTGAATGCGGCATACTCCGGCCTAANCAGGACACNGCCGGAGCAGTGGTTGAGGGAGAGGAGTTTCGGAACTACACACATGAAGAGAGGTTGGAGAAAGTGGACAAGATCTGTGTGATGGCAAGGTCCTCTCCTTTTGACAAACTACTAATGGTTCAGTGCCTAAAACAGAAAGGCCATGTAGTTGCTGTCACTGGGGATGGCACAAATGATGCACCAGCACTCAAGGAAGCAGATATTGGACTTTCCATGGGAATTCAAGGCACTGAAGTGGCCAAAGAGAGCTCAGATATTGTCATATTGGACGACAACTTCGCGTCCGTGGTCACGGTCTTACGGTGGGGGAGATGTGTTTACAACAACATCCANAAGTTCATTCAGTTCCAATTAACAGTCAATGTTGCTGCACTTGCAATCAACTTTGTGGCAGCAGTTTCAGCAGGGGAAGTTCCACTCACAGCAGTGCAACTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCCACAGAGAAGCCTACAATGGAGCTAATGGATAAACCACCAGTTGGTAGAACAAAACCTCTCATCACCAACATCATGTGGAGGAATCTATTGGCACAAGCTTTGTACCAGATAGCAGTTTTGCTTACCCTTCAATTCAAAGGTGAGTCTATCTTTGGGGTGACATCAAAGGTGAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTTTTCAAAGGCATACTTAGAAGCAAGTTGTTTTTGGGAATTGTTGGTGTAACAATAGTACTTCAAGTGGTGATGGTTGAGTTTCTCAAGAAGTTTGCTGATACTGAGAGGTTGAATTGGGGGCAATGGGGTATTTGTATTGGTCTTGCTGCAGTTTCTTGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGATAAACCATTCCTCAGTTTTTTGAGTAAGATGAAGAGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00505	4423	7633	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000505s00021205.1	PF00702.21	Hydrolase	88	394	2.80E-25
Glyur000505s00021205.1	PF00689.16	Cation_ATPase_C	465	635	2.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.713
SRR1783600	control	0.674
SRR1783602	moderate drought stress	0.284
SRR1811619	moderate drought stress	0.272

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.353
DRR006520	Root Summer glycyrrhizin high producing strain	2.023
DRR006521	Root Winter glycyrrhizin high producing strain	0.171
DRR006522	Root Winter glycyrrhizin high producing strain	0.055
DRR006523	Root Summer glycyrrhizin low producing strain	3.820
DRR006524	Root Summer glycyrrhizin low producing strain	3.884
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.347
SRR2868004	Drought Stress (root)	1.993
SRR2967015	Control (root)	1.404

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.306
SRR9715740	Leaf	1.722
SRR9715741	Leaf	2.527
SRR9715739	Root	0.954
SRR9715742	Root	10.658
SRR9715743	Root	8.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.176
SRR8749028	MeJA induced 9h	0.980
SRR8749029	MeJA induced 9h	0.308
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.329
SRR8400027	Control - Root	1.356