Gene detail

Gene detail information of Glyur000504s00018084

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36670.2	1.00E-168	Eukaryotic aspartyl protease family protein
NR	AES60673.2	0	eukaryotic aspartyl protease family protein [Medicago truncatula]
Swissprot	tr\|Q9S9K4\|ASPL2_ARATH	1.00E-90	Aspartic proteinase-like protein 2 (Precursor)
trEMBL	tr\|G7IA56\|G7IA56_MEDTR	0	Eukaryotic aspartyl protease family protein {ECO:0000313\|EMBL:AES60673.2}

Sequence

Transcript Sequence

>Glyur000504s00018084.1
TTCAAATTTATCAATTCATAATCTACTCACATCAATTCAGCTGATTAACAGTAATCATCAACTATCATCATGTCTTAAAGAAACCGTAATAACACCTCTCTCTCTCTCTCTCCTCAATGTTTCATCTTTCAATGCACCAAAGCAAGCACCGACTCCATCATCACCATTATTATTCCCATTAAGAGAAAGAAAAGAAAAGAAAACCCCAAAAAATAAAAGAGAAANGAAAATGCGGTTTTTAATACCGGCGGTGGTGTTGGGAATGGCCACGGTGGTGGTGTCGGCGGTGTGCAGCGGTGTCCTCCCTCTGGAACGGCTGAGCCACCGCGTGGAGATGGAGGAGCTGAGGGCTCGCGACAGAGTCCGCCATGCTCGAATCTTGCGAGGTGTTGTTGGTGGCGGCGGCGTCGTCGACTTCTCAGTCCAAGGCACCTCCGATCCATACTCCGTTGGGTACGGGCTGTATTTTACCAAAGTGAAGATGGGGTCTCCCCCGAGGGAATTTAACGTTCAGATTGATACTGGAAGTGACATTTTGTGGGTTAATTGCAATACTTGCAGTAATTGCCCTCAATCTAGTGGACTTGGGATTGAGCTCGATTTCTTTGACACGGTTGGCTCGTCCACAGCTGTGCTGGTTCCCTGCTCGGATCCGGTATGCACTTCTGGGGTTCAGGGTGCGGCTGCTGAGTGCTCCCCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGGTGATGGGAGTGGCACATCGGGTTATTATGTTTCTGATNCAATGCATTTTGACATGATTCTGGGACAGTCTCCTCCGGTTAACTCTTCCGCTACCATTGTTTTTGGGTGTAGCACCTATCAGTCTGGAGATTTGACTAAGACAGATAAAGCAGTGGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTGTATCGCAATTGTCATCGCGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAAAGCATTGCTGTCAATGGGCAACTTCTCCCAATTAATCCAGCTGTGTTTGCAACATCTAACAACCGAGGAACTATAGTTGACTGCGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCAATGCAATAACTACTGCTGTGTCACAATCTGCCAGTCCCATTATTTCAAAAGGAAGCCAGTGTTATCTGGTCTCAACCAGTGTAGATGATATTTTTCCTCCAGTCAGCTTAAACTTTGCGGGTGGAGCATCNATGGTTTTAAAACCAGAACAATACCTTGTGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATAGGTTTCCAGAAAGTGCAGGAGGGAGTCACAATNTTAGGAGATCTTGTCCTGAAAGATAAGATAGTTGTCTATGACTTAGCTCATCAGCGAATCGGATGGGCTAACTATGATTGTTCATTGTCTGTGAACGTTTCTGTGACTACAAGCAAGGATGAGTACATCAATGAGGGACAAACGAGTGTAAGCAGCTCAGAGATAAGGATTCTCTCCAGGTTACTACTACCTGTAAGCATTGTGGCTCTCTCTATGCACATACTAATCTTCTTGAGGACCCCATTTTTGTAATTTAAAAAGTCCCAAGATTCAGAAGCTCATTCTTTTTCACCCAACATCATTGAGAGAAGACCTACCTGAGTCAGTGGTAGCTGTTTCTACTCTTATGTTCATTCTGATTGGCATGTTCACAAAAGGGGCATCTTCCATTTACCCAAATGAGGATTTCACTGTAAAGAGAGACTGGCAGAGATGTATATTAGTATAATCTGTAGTGGAATTTAATTTGTACTATTTATTTAGGGCTCTGGGGGCATAGAAGTGTAGAACAGTTTCAGTTGTGGCTTGCGGTCTTTAGCCCTCACGTTTAGGTAAGTGTATAGGAATCTCATATGTCCATGGATTGGATTCATGAATGGTATTCAGGGAACTTTGTGATATTTAAAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00504	141039	145992	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000504s00018084.1	PF14543.1	TAXi_N	79	264	1.70E-33
Glyur000504s00018084.1	PF14541.1	TAXi_C	283	432	2.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.487
SRR1783600	control	20.439
SRR1783602	moderate drought stress	10.140
SRR1811619	moderate drought stress	9.922

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.157
DRR006520	Root Summer glycyrrhizin high producing strain	16.899
DRR006521	Root Winter glycyrrhizin high producing strain	2.971
DRR006522	Root Winter glycyrrhizin high producing strain	2.989
DRR006523	Root Summer glycyrrhizin low producing strain	14.399
DRR006524	Root Summer glycyrrhizin low producing strain	14.703
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.445
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.397

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.582
SRR2868004	Drought Stress (root)	8.892
SRR2967015	Control (root)	9.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.911
SRR9715740	Leaf	1.053
SRR9715741	Leaf	1.797
SRR9715739	Root	18.408
SRR9715742	Root	13.974
SRR9715743	Root	12.995

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.074
SRR8749028	MeJA induced 9h	16.177
SRR8749029	MeJA induced 9h	18.450
SRR8749030	Uninduced	11.610
SRR8749031	Uninduced	12.056
SRR8749032	Uninduced	17.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.808
SRR8400027	Control - Root	40.401