Gene detail

Gene detail information of Glyur000504s00018070

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G57060.2	binding
NR	XP_004514724.1	PREDICTED: condensin complex subunit 1-like [Cicer arietinum]
trEMBL	tr\|A0A072VHH5\|A0A072VHH5_MEDTR	Condensin complex subunit 1 {ECO:0000256\|PIRNR:PIRNR017127}

Sequence

Transcript Sequence

>Glyur000504s00018070.1
TTTGAATTTCGTAATTCGTAGTTCCCCAAACGACACACACACAGCACACAGCACAGAGCCGAATCCAATCCAAATCCAAAAATCCAACACAGGAGAAAACCTCGCTCTCTCTCTCTCACTCCATAACCATGGCTCCTCACTTCGTGTTCCCTCGCACTCTCCAAGACCTCGAAGAAGAAGAAAACGACGACAACAACAACCGCCTCTGCGTCCAAAACCCCGTCGACGTCGCTTCCCTCCGCTCTTCCCAACTCGAAGAATTCGTCAAAGGTGTGTCGTTCGACCTCTCCGACAGAGAACTACTGTGCGTGGAGGACCAGGATGTGTTCGACCGTCTTTACTCGTTGGTTCGCGGTTACGCTACTCTACCTAACTCATCCAAACTCAACCTCGTCGAGAGTCTCCGTTCTAACCTCGCCGTGCTTCTCCCCAACGCCGATTCACTCTCCAGGGCTTCCAATCCTTCTCCTCGTGATGGTGACGAAGGCGGTGACTATGCTCCCCTACCGGATCGCGTCGCGTCGCATCGGAATGCTTTTAAGATATACACCTTCTTCCTCCTTCACATTGTTCTCGCTGAAGAGTCCAGCCACGGCTCCAAGGTTGTGGCAGCAAGTGCCAGGAAGAAGCAAGCTGCTAATAGATGGAATTGGGAGCCTCAAAGGGCTCGGATACTCAATCTCATTGCCAACTCACTGGAGATAAACCTTGAAGTACTTTTTGGTTCACCTGACCTGGACGAAGGTTACCTGTCTTTCATCACAAAAAATGCATTCTCCATGTTTGAGAACGCAGCACTCTTAAAAGATTCGGATGTAAAAGATGCCCTCTGTCGCATAATTGGAGCCTGCTCTACCAAGTACCATTACACAACACAGTCTTGTGCATCCATCATGCACCTAATTCACAAGTATGATTTTGTTGTCATCCACATGGCTGATGTGGTCTCCGGTGCCCAAAAAAAGTACTCAGATGGAAGCCTTGCCACTTCCCTTGTTAGGGAAATCGGAAGGACCAATCCAAAAGATTATGTGAAAGACACTGCTGGTGCTGAAAACGTGGGGCGTTTTCTGGTGGAGCTAGCTGACCGCATTCCTAAATTGATCTCTACTAATATCGGCATTCTTGTTCCTCACTTTGGTGGAGAGTCTTATAAGATTAGAAACGCTCTTGTTGGGGTTCTGGGGAAGCTAATAGCCAAGGCATTTAAGGATGTGGACGGTGAAGTGAGTTCCAAGTCCATTCGCTTGCGTACTAAGCAAGCCATGTTGGAAATTTTGCTTGAGCGGTGTAGGGATGTTTCGGCTTACACGCGGAGCCGGGTGCTTCAGGTGTGGGCTGAGTTATGTGAGGAACATTCAGTTTCAATTGGGTTGTGGAATGAGGTTGCGGAAGTTGCTGCTGGGAGATTGGAAGACAAGAGTGCAATAGTCAGAAAATCTGCTTTGAATTTGTTAATTATGATGCTGCAGCATAATCCTTTTGGTCCGCAGCTCCAAATAGCTTCATTTGAAGCAACGTTGGANCAGTACAAGAAGAAGTTGAAAGAGCTTGAGCCTTCAGAAGGTTCTGATCCTGAAAATTCTAACGGGGATGGAGAAGTGGAGGATTTGAATTTTGAAACTGTTGCAAAGGAGCAGCAGGAGAGTNTGACTGATACTTGCATGTCCCAGGCAGAAGATGCAATCCCTTTGCAGAATGGTAGTAATAGTAGCGTGCCTGATGTTGGGAACTTGGAGCAGACTAGGGCCTTGGTTGCATCGCTTGAGGCTGGATTGAGGTTCTCTAAATGTATAGGGGCCACAATGCCGACACTTGTTCAATTGATGGCTTCATCTTCTGCTACTGATGTTGAAAATACAATTCTCTTGTTGATGAGGTGCAAACAGTTTCAAATTGATGGCTCTGAGGAATGTCTCCGAAAGATGTTACCACTGGTGTTTTCTCAGGATAAATCCATCTTTGAAGCAGTGGAGAACGCTTTCAATACAATATACATCAGGAAAAACCCAATGGAAACTGCCAGGAATCTCTTGACTCTTGCCACTGATTCCAATATAGGAGATTTAGCAGCTCTTGAGTTTATAGTTGGCGCCCTGGTCTCTAAGGGTGATATATCTTCCAGCATAATATCAGCGTTATGGGATTTCTTTTGCTTCAATGTGGGTGGAACCACTGCAGAACAAAGCCGTGGTGCCTTATCTGTCCTTTGCATGGTCGCAACGACATCAACTGGTGTGCTTGGCTCACATTTACAGGACATCATTGATATTGGGTTTGGTCGTTGGTCTAAAGTTGATCCTTTGCTAGCGAGGACAGCATGTCTTGCTATCCAGAGACTGTCTGAAGATGACAAGAAAAAATTCTTGGCAAGTAATAGTGTTCGAATATTTGGTATTCTAGAAAGTTTAATAACTGGTTTTTGGCTTCCAGCGAATATTTGGTATGCTGCTGCTGACAAAGCAATAACTTCCATATATGCCATTCACCCTACCCCAGAAACCATAGCAGCTGACATGATAAAGAAATCTCTCAGTTCTGTCTGTAATGATGGTGGTGGTAGTGATACTGACACTAGTGGCAGCATGCCTATCACAGTCAAAGTAGCAAAACTCAGCAGATGTTTATTTGTCATAAGTCATATTGCAATGAATCAACTGGTGTATATTGAATCCTGTGGTCGTAAAATTCAGAAGCAGAAACTTGCGAAAGAGAAAAAGAACATCGAGAATCAGAGTGCAGACAGTAATGGTACAGCATCAACTGGTACACAGAAGGATAATGATATAAATGCTGAGTTAGGATTTGCTGCCTCTGAGGATGCAGCACTTGATGCTTTATTTGAAAAAGCAGAAAAAGAAATTGTTTCTGGTGGTTCAAATGAAAAGAATTTGGTTGGTATCTGTGCAGACTTTTTGTCAAAGCTTTGTAGAAATTTCGGACTACTGCAGAAGTATCCAGAATTACAGGCATCTTCAATGCTTGCTTTGTGTCGATTGATGATAATTGATGCAGATTTTTGTGATGCAAATCTCCAGCTCCTCTTCACTGTTGTGGAAAATTCACATTCAGAAATTGTCCGTTCTAATTGCACTATCGCACTAGGAGATTTAGCAGTACGGTTTCCCAATATTTTAGAACCATGGACAGAAAACATGTATTGCCGCCTAAAGGATCCTTGTGTATCTGTTAGGAAGAATGCGGTTCTGGTGCTTTCACATCTCATACTAAATGACATGATGAAGGTAAAAGGATATATCAATGAAATGGCTGTAAGATTAGAAGATGAAGATGAGAGAATTTCAAATCTGGCTAAGCTATTTTTTCTTGAACTTTCCAAAAAAGGAAACAATCCAATATATAATTTGCTTCCGGATATACTTAGCAAATTATCCAAGCAGAACCTGAGCAATGATTCTTTCTGCAACATCATGCAATTTTTAATTACTTCCATCAAGAAGGACAGACAAATGGAAGCTCTGGTGGAAAAGCTATGCAATCGGTTTAGTGGTGTTACAGATGTCAGACAATGGGAACACATATCTTATTGTCTCTCTCAACTATCATTTACTGAAAAAGGGATGAAAAAACTCATAGATTTGTTTAAGACATATGAACATGTCTTGTCGGAGGATTCTGTCATGGATCATTTCAGGAACATATTAAACAAGGGAAAGAAGTTTGCAAAACCTGAACTTAAATCTTGCATTGAGGAATTTGAGGATAAGCTGAATAAGTTCCACATGGAAAAGAAGGAACAGGAAGTTACTGCTCGAAATGCCCAAATCCATCAACAGAAGATTGGCAGCAGGGAAGGTTTTAATGTGGATACAAATTCCGAAGATCACTCGGAATCTAATACTGTTTCAGACGAAGCAGACGGTGAAGTAATTGATGCAGGCACTGAAGAGACAAATACTTTGTCTTTAAATGGTAAATCACAATCTAAACCTGTGTCAGAAGCATATTCTGGTGCTTCGAGTGAGTTGATTGAGTCAGATCAAGGGGATATTGAAGTCCAATCACCATGCATTAAGACTAGAGGAGCTCAAAGGTCCAGAACTAAGAAAAGCAATGTAAAAGATGGAAAGGGTGATATCTCTGTCACCAATAAAAGATCTACTCGGTCAAGGACTCTGCATAAAAGATAGATACTCTAAAGACACCTTTGGATGAAAAGATAGACTCGTCAGCTTGATTTGGTANTTTTTATGGTTATTGATACAATGCCTACATTGTATAGCAAATGGATGTTGTATAACAGTGGAGCACTTCTCGGAAGTTGTATAGTTGAAAATTGAGTGATCTTTTAA

Protein Sequence

>Glyur000504s00018070.1
MAPHFVFPRTLQDLEEEENDDNNNRLCVQNPVDVASLRSSQLEEFVKGVSFDLSDRELLCVEDQDVFDRLYSLVRGYATLPNSSKLNLVESLRSNLAVLLPNADSLSRASNPSPRDGDEGGDYAPLPDRVASHRNAFKIYTFFLLHIVLAEESSHGSKVVAASARKKQAANRWNWEPQRARILNLIANSLEINLEVLFGSPDLDEGYLSFITKNAFSMFENAALLKDSDVKDALCRIIGACSTKYHYTTQSCASIMHLIHKYDFVVIHMADVVSGAQKKYSDGSLATSLVREIGRTNPKDYVKDTAGAENVGRFLVELADRIPKLISTNIGILVPHFGGESYKIRNALVGVLGKLIAKAFKDVDGEVSSKSIRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLQIASFEATLXQYKKKLKELEPSEGSDPENSNGDGEVEDLNFETVAKEQQESXTDTCMSQAEDAIPLQNGSNSSVPDVGNLEQTRALVASLEAGLRFSKCIGATMPTLVQLMASSSATDVENTILLLMRCKQFQIDGSEECLRKMLPLVFSQDKSIFEAVENAFNTIYIRKNPMETARNLLTLATDSNIGDLAALEFIVGALVSKGDISSSIISALWDFFCFNVGGTTAEQSRGALSVLCMVATTSTGVLGSHLQDIIDIGFGRWSKVDPLLARTACLAIQRLSEDDKKKFLASNSVRIFGILESLITGFWLPANIWYAAADKAITSIYAIHPTPETIAADMIKKSLSSVCNDGGGSDTDTSGSMPITVKVAKLSRCLFVISHIAMNQLVYIESCGRKIQKQKLAKEKKNIENQSADSNGTASTGTQKDNDINAELGFAASEDAALDALFEKAEKEIVSGGSNEKNLVGICADFLSKLCRNFGLLQKYPELQASSMLALCRLMIIDADFCDANLQLLFTVVENSHSEIVRSNCTIALGDLAVRFPNILEPWTENMYCRLKDPCVSVRKNAVLVLSHLILNDMMKVKGYINEMAVRLEDEDERISNLAKLFFLELSKKGNNPIYNLLPDILSKLSKQNLSNDSFCNIMQFLITSIKKDRQMEALVEKLCNRFSGVTDVRQWEHISYCLSQLSFTEKGMKKLIDLFKTYEHVLSEDSVMDHFRNILNKGKKFAKPELKSCIEEFEDKLNKFHMEKKEQEVTARNAQIHQQKIGSREGFNVDTNSEDHSESNTVSDEADGEVIDAGTEETNTLSLNGKSQSKPVSEAYSGASSELIESDQGDIEVQSPCIKTRGAQRSRTKKSNVKDGKGDISVTNKRSTRSRTLHKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00504	32066	41165	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007067 mitotic nuclear division

GO:0007076 mitotic chromosome condensation

GO:0030261 chromosome condensation

cellular_component
GO:0005634 nucleus

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000504s00018070.1	PF12922.2	Cnd1_N	80	250	4.40E-37
Glyur000504s00018070.1	PF12717.2	Cnd1	982	1145	5.60E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.251
SRR1783600	control	1.270
SRR1783602	moderate drought stress	2.410
SRR1811619	moderate drought stress	2.454

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.226
DRR006520	Root Summer glycyrrhizin high producing strain	4.217
DRR006521	Root Winter glycyrrhizin high producing strain	0.354
DRR006522	Root Winter glycyrrhizin high producing strain	0.376
DRR006523	Root Summer glycyrrhizin low producing strain	3.897
DRR006524	Root Summer glycyrrhizin low producing strain	3.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.944
SRR2868004	Drought Stress (root)	3.245
SRR2967015	Control (root)	4.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.392
SRR9715740	Leaf	0.043
SRR9715741	Leaf	0.298
SRR9715739	Root	0.129
SRR9715742	Root	1.571
SRR9715743	Root	0.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.307
SRR8749028	MeJA induced 9h	4.240
SRR8749029	MeJA induced 9h	2.120
SRR8749030	Uninduced	0.890
SRR8749031	Uninduced	0.417
SRR8749032	Uninduced	0.570

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.466
SRR8400027	Control - Root	3.653