Gene detail

Gene detail information of Glyur000504s00018065.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57050.1	0	cystathionine beta-lyase
NR	XP_004514725.1	0	PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cicer arietinum]
COG	YP_591057.1	4.00E-148	cystathionine beta-lyase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|P53780\|METC_ARATH	0	Cystathionine beta-lyase, chloroplastic (Precursor)
trEMBL	tr\|A0A072VLA8\|A0A072VLA8_MEDTR	0	Cystathionine beta-lyase {ECO:0000313\|EMBL:KEH42223.1}

Sequence

Transcript Sequence

>Glyur000504s00018065.2
CCCTGGATATCATATCACAGCACTGAGCAGCCATTTAAACCTACTTTTTTCTCACCATGGTGACGTCGAAAATGGGCGGTGGGCACCACCTTATACACAAGCAGCAACAACAACAACAACAGTCTCTGCTTTCGCTGAACTTCAACAATGGTTTCCTCTTCGATCTCCCTCAGGCCCTTCGCCAATTCTGTTGCCATTTCTCGCGCCACTCAGAGCACAATTTCTGGAAATACGTGGGAGAGGGAGAGCTTGGGGTTTAGCAAGTCTGCGAGTTTCAGAACAAGTAAACTGTTGTGTGCAAAGGGGTTCAAGCTCAATTGCTCGGTTGATAGAGATATGGATGTGAGCACTTCGGCTTTGGTAGATGTTGATGTTGCAGAGTGCTTAAGTGAAGAGGGGCTAAGGGAGCCTGGCATTTCAACAATGGTGATGAATTTTGAGAATAAGTTTGATCCTTATGGGGCAATTAGTACGCCGCTTTACCAAACTGCTACTTTTAAGCAGCCTTCTGCAATAGAAAATGGTCCCTATGACTATACCAGAAGTGGAAATCCCACTCGAGATGCTTTAGAAAGCATACTTGCAAAACTTGATAAAGCANATAGAGCCTTTTGCTTCACCAGTGGAATGGCTGCTCTGAGCGCTGTTGTTCACCTTCTTAAAAGCGGTGAGGAAATTCTTGCCGGAGATGATCTGTATGGTGGTTCAGATAGGTTGCTGTCCCAAGTAGTTCCCAAGAGTGGAGTTGTGGTGAAACGGGTAAATACGACCGATCTAAATGAGGTTGCATCTTCTATTGGACCCAGGACTAAGCTTGTATGGCTGGAGAGTCCAACTAATCCCCGCCTACAGATTTCTGATATTCGAAAAATTGCAGAGATGGCTCATGCACATGGTGCTNTTGTGTTGGTGGACAATAGTATAATGTCACCTGTATTATCCCAGCCATTGGAATTTGGAGCAGATATTGTCATGCACTCAGCTACCAAATTTATTGCTGGACATAGTGATATTATGGCTGGTGTGCTTGCTGTGAAAGGTGAAAGGTTGGCAAAAGAAATATATTTCTTACAAAATGCAGAGGGCTCAGGCTTAGCTCCATTTGACTGTTGGCTTTGTTTGCGAGGAATCAAGACAATGGCCCTTCGAGTTGAGAAGCAACAGGAGAATGCACAAAAGATTGCAGAGTTCCTTGCCTCCCATCCCCGNGTGAAGAAAGTAAACTATGCTGGTTTGCCCGGTCATCCAGGAAGAGATTTACACTACTCTCAGGCAAAAGGTGCAGGATCTGTGCTTAGCTTTTTGACGGGTTCACTGGCTCTCTCAAAGCATATTGTTGAAACAACCAAGTACTATAGCATAACTGTTAGTTTTGGGAGTGTAAAATCCCTCATCAGTATGCCCTGCTTTATGTCCCATGCTAGCATTCCTGCTGCAGTCCGTGAGGCCAGAGGTTTAACTGAAGATCTTGTACGTATATCTGTGGGTATTGAGGATGCAGATGATCTGATCGCTGATCTAGACAATGCATTTAGAACCGGGCCTCTGTAATTTCATATAAATATCCACCCCTTGAGTAGTTGGATAAACTATATGCTTGTTTTAAATAACGAATATTATATANCTAAGTTATGATGAAACATGCTGAAGATTTGGAAGCGTGGTTGTCCTAATAGTGGACCCTCTGTAGACTGAAAACTTCAATGGAGTATATTTATTGTATTTTACAATTTTCAAAATCCNATATTTTTTGTAATATTGAAGTTGTAGTTGTGTTTTTAACCAAAGTTCAGATTTTTTTTTTTCAAGCACACTTTCTGTATCAAACCCNATTCTACAAGTGGACGGGTTCAATTATATCCCCTTTGTCAATGGCACCTATTGGTGGTCCTTTTCTCTTTAAGGGGATTCACCCCTGCAAAGGGTCTTGGCCTATATAGGATTAGTCTGTGTGTCACCTTTGAGTGAACACTGGCAACTCCCAGTCCCAAGGTGGACTTCTGCCTAATCTTTAATGCACATTCTTCACTCAAATAAGCTCTAGCTCTAATTATCTTCACATGATTTACCTATTCATCTCCAAATCTCACAGCATGAGAGCCATTGCTTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00504	7329	15296	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01760	metC	EC:4.4.1.8	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450
			Selenocompound metabolism	map00450

Gene Ontology

biological_process
GO:0071266 'de novo' L-methionine biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004121 cystathionine beta-lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000504s00018065.2	PF01053.15	Cys_Met_Meta_PP	92	462	6.90E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.612
SRR1783600	control	30.795
SRR1783602	moderate drought stress	31.068
SRR1811619	moderate drought stress	30.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.031
DRR006520	Root Summer glycyrrhizin high producing strain	27.881
DRR006521	Root Winter glycyrrhizin high producing strain	22.383
DRR006522	Root Winter glycyrrhizin high producing strain	21.693
DRR006523	Root Summer glycyrrhizin low producing strain	31.944
DRR006524	Root Summer glycyrrhizin low producing strain	32.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.677
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.160
SRR2868004	Drought Stress (root)	48.318
SRR2967015	Control (root)	46.995

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.451
SRR9715740	Leaf	17.123
SRR9715741	Leaf	20.362
SRR9715739	Root	37.001
SRR9715742	Root	31.149
SRR9715743	Root	31.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.137
SRR8749028	MeJA induced 9h	26.356
SRR8749029	MeJA induced 9h	20.852
SRR8749030	Uninduced	9.855
SRR8749031	Uninduced	6.191
SRR8749032	Uninduced	9.367

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.021
SRR8400027	Control - Root	45.265