Gene detail

Gene detail information of Glyur000504s00018064

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47930.1	1.00E-153	L-galactono-1,4-lactone dehydrogenase
NR	AES60484.2	0	L-galactono-1,4-lactone dehydrogenase [Medicago truncatula]
COG	YP_004402999.1	3.00E-34	fad-linked oxidoreductase [Verrucosispora maris AB-18-032]
Swissprot	tr\|O47881\|GLDH_BRAOL	0	L-galactono-1,4-lactone dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|G7I7B4\|G7I7B4_MEDTR	0	L-galactono-1,4-lactone dehydrogenase {ECO:0000313\|EMBL:AES60484.2}

Sequence

Transcript Sequence

>Glyur000504s00018064.1
CCCACTCCCTCCTAGTGAATATTTACTCTTCCTATTCCCACTTCCGTATTCACCCTCACTCAATCACTCCTTCAACAGTGTAACTGCACTCTACTCTCGAGCTCAGAGAGATGCTGAGAGCTCTGCTTCCCAAACGTTTCCTTCGTCTCCACCACCACCACCACTACCACTCCTCAACTCCTTCACATTCCCACCCTCTCCAAAAAGCCCTCACCACCACCACCCCCCCACCGAACCCCCTTCTTCTCCGCCGATTCTCCACCACCACACCACCGGAACCCACCTCCTCCACCGATGCNGAAACCCGCAAGTACATCGGCTACGCCGCACTCCTCCTCTTCTGCGGCGCCGCCACTTACTACTCCTTCCCCCTACCCGACAACGCGAAGCACAAGAAGGCACAGATCTTCCGCTACGCACCCTTACCCGAGGACCTCCACACCGTATCCAACTGGAGTGGGACCCACGAGGTGCAGACACGTAATTTTNACCAGCCCGAGAGCCTGGACCAGCTGGAGCGCGTTGTGAAGGAGGCCCACGAGAGGAAGGCCCGGATCAGGCCCGTTGGGTCGGGCTTGTCCCCCAACGGGATTGGGCTTTCGCGGACCGGGATGGTTAACCTGGGCCTGATGGATTCAGTATTGGAAGTGGACAAGCAGAGGAAGACCGTTAGGGTGCAGGCTGGGATAAGGGTTCAGCAGCTTGTGGATGGGATTAAGGAACATGGCCTCACTCTCCAGAATTTTGCTTCCATTAGGGAACAGCAAATTGGTGGCATCATTCAGGTTGGTGCACATGGCACTGGTGCGAGATTGCCTCCTATTGATGAACAAGTAATTGCCATGAAACTGGTCACGCCTGCCAAGGGGACAATAGAGATCTCAAAAGAGAAAGATCCTGAGCTGTTTTATCTTGCTCGTTGTGGTCTTGGGGGACTTGGAGTTGTGGCTGAAGTCACCCTTCAGTGTGTTGATCGACAGGAGCTTGTGGAGCACACTGTTGTCTCAACCATGGATGAGATAAAGAAAAATCACAAGAAATTGCTATCTGAGAATAAGCATGTCAAGTACCTTTATATCCCTTATACCGACTATGTCGTGGTTGTGAGATGCAATCCTGTTTCAAAGTGGAGAGGTCCTCCCAAATTCAAACCAAAATATACTAAAGACGAAGCCATACAGCATGTGCGAGACCTATATAGGAGTCCCTCCGGAAATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00504	593	4019	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00225	GLDH	EC:1.3.2.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0003885 D-arabinono-1,4-lactone oxidase activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0016633 galactonolactone dehydrogenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000504s00018064.1	PF01565.18	FAD_binding_4	126	255	8.40E-27
Glyur000504s00018064.1	PF04030.9	ALO	282	341	2.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.786
SRR1783600	control	17.883
SRR1783602	moderate drought stress	16.850
SRR1811619	moderate drought stress	16.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.485
DRR006520	Root Summer glycyrrhizin high producing strain	12.599
DRR006521	Root Winter glycyrrhizin high producing strain	3.514
DRR006522	Root Winter glycyrrhizin high producing strain	3.786
DRR006523	Root Summer glycyrrhizin low producing strain	11.963
DRR006524	Root Summer glycyrrhizin low producing strain	13.946
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.004

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.799
SRR2868004	Drought Stress (root)	15.642
SRR2967015	Control (root)	15.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.248
SRR9715740	Leaf	14.687
SRR9715741	Leaf	15.265
SRR9715739	Root	9.193
SRR9715742	Root	21.811
SRR9715743	Root	20.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.639
SRR8749028	MeJA induced 9h	11.143
SRR8749029	MeJA induced 9h	3.979
SRR8749030	Uninduced	0.801
SRR8749031	Uninduced	0.534
SRR8749032	Uninduced	0.303

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.508
SRR8400027	Control - Root	20.369