Gene detail

Gene detail information of Glyur000503s00017757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16990.1	1.00E-134	Zinc-binding dehydrogenase family protein
NR	ACU24585.1	0	unknown [Glycine max]
COG	YP_001412376.1	4.00E-74	alcohol dehydrogenase [Parvibaculum lavamentivorans DS-1]
Swissprot	tr\|Q9SLN8\|DBR_TOBAC	6.00E-165	2-alkenal reductase (NADP(+)-dependent)
trEMBL	tr\|C6TNU3\|C6TNU3_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU24585.1}

Sequence

Transcript Sequence

>Glyur000503s00017757.1
ATGGGGGAAGTGAGGAACAAGCAAGTGGTTCTGAGGGACTATGTGTCTGGTTATCCTAAGGAGTCAGACATGAACATTGTTGAGGGCACCACAAATCTGAAGCTTCCAGAAGGTTCCAACGAGGTGCTGCTGAAGAATCTCTACTTGTCATGCGATCCATACATGCGAGCCCTCATGGGCAAGATGGAAGGCCCCGAGGGATTGCGCACCTTCACCCCTGGTTCTCCATTAACAGGATTTGGTGTGTCTAAAGTCCTAGAATCTGGACACCCAGATTATAAAAAAGGTGACTTAGTTTGGGGGATCACTAGATGGGAAGAGTACACCTTAGTCCCCTCCACTCTATTACTTTTCAAGATTGTGCATACCGATGTCCCACTTTCCTACTATACTGGAATTCTTGGTATGCCAGGAATGACTGCTTATGCTGGTTTCTTTGAAGTAGGCACTCCTAAAAAAGGAGAGAAAGTTTTTGTTTCAGCTGCCTCTGGTGCAGTTGGTCAACTTGTTGGACAGTTTGCTAAATTTACTGGTTGTTATGTCGTTGGAAGTGCTGGAAGTAAACAAAAGGTGGATCTACTAAAGAATAAATTAGGATTTGATGAAGCTTTTAACTACAAAGAAGAGTCTGATCTCAATGCAGCATTGAAAAGGTGCTTTCCAGAAGGCATTGACATTTACTTTGAGAATGTTGGGGGCAAGACACTTGATGCTGTGCTCCTGAATATGAGAGTCCACGGTCGCATNCCTGTGTGTGGAATGGTCTCACAGTATAATCTTGCTCAACCGGAAGGCATAACTAATTTGGCGAATCTCATATTTAAGCGGGTTCGCATGCAAGGCTTTAACGTTGGCGATTACTATCCTTTGTATCCCAAATACTTGGAGTTTGTTGTGTATGTGGAAGACATTGTTGAGGGACTTGAGAATGCCCCTGCAGCCTTGGTTGGCCTCTATAGTGGTCACAATGTTGGTAAACAAATGGCTCAAGTGAGGAACACTCAAGTGGTTCTTAGGGACTTTGTGTCTGGTTATCCAAAAGAATNCGATATGAGGGTAGCTGAGAGCACCGTAACTCTCAAGGTTCCAGAAGGTTCCGAGGAAGTGCTGCTCAAGAATCTCTACTTGTCATGTGACCCGGGCATGCGAGTCCAAATGAGCCAGCCATTAACAGGATTTGGTGTGTCTAAAGTCCTAGAATCTGGACACCCAGAGGTTCGCATACAAGGTTTTCTCGTTGTTGATTACTATCCCTTATATCGCAAATACTTGGAGTTTGTGCTGCCACACATCAAAGAAGGGAAGGTTATGTATGTAGAAGACATAGCTGAGGGCCTTGAGAATGGCCCTGCAGCCTTGGTTGGCCTCTTTAGTGGTCACAATGTTGATTGGAGTGGACGTGACGTGCTTAAGCTTTTCAACACAAACAACAAACCTGAACTCTGCAGTGAAAGTGTGACACAATTCCTACGAATGGCGGAAGTGCGGAACAAGCAAGTGGTTCTGAGGGACTATGTGACTGGTTTCCCCAAAGAATCTGACATGAGCATTGTTGAGGGCAGCATAACTCTGAAGCTTCCAGAAGGTTCCAATGAGGTGCTGCTGAAGAATCTCTACTTGTCTTGCGATCCATACATGCGGATTCTTATGAACAAGGGTACTTCTGAAGGACTTGGTGCCAACATTCCAGGCTCTAAAGGTGATTTAGTGTGGGGTATCACTAAATGGGAAGAGTATAGCTTGGTCCCCTCAACTCAACCGTTTTTCAAAATTGAGCACACTGATGTCCCACTTTCCTACTATACTGGAATCCTAGGTATGCCCGGAATGACGGCTTATGCTGGTTTCTTTGAAGTCGGCTCTCCCAAGAAAGGAGAGAATGTTTTTGTTTCAGCTGCCTCTGGTGCAGTTGGTCAACTTGTTGGACAATTTGCNAAATTGACCGGTTGTTATGTTGTCGGAAGTGCTGGAACTAAAGAGAAGGTGGATCTGTTGAAGAATAAATTTGGATTTGATGAAGCTTTTAACTACAAAGAAGAGCCAGAACTCGATGCAGCATTGAAAAGGTACTTTCCAGAAGGCATTGACATTTACTTTGAGAATGTTGGGGGCAAGACACTCGATGCTGTACTACCGAATATGAGAGTCCATGGNCGCATACCTGTATGTGGAATGATCTCACAGTATAATCTTACTCAACCTGAAGGGGTAACAACTTTGGCAAATATCATATTCAAGCGGATTCGTATGGAAGGTTTTGTTGTAGTTGAATACTATCACCAGTATCCCAAATTCTTGGAGTATGTCCTGCCTCTTATCAGAGAAGGGAAGATTGTGTATGTGGAAGACATTGCTGAGGGTCTTGAGAATGGCCCTGCAGCCTTGGTTGGCCTGTATAGTGGTAAAAATGTTGGTAAACAAGTGGTTGTTGTTGCACGTGAATGAATGCAGAATGCAAGTGCTTTTGTTAAATATTGTCATCTTTTTTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00503	11307	28799	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000503s00017757.1	PF00107.21	ADH_zinc_N	165	297	6.70E-22
Glyur000503s00017757.1	PF00107.21	ADH_zinc_N	636	769	2.30E-21
Glyur000503s00017757.2	PF00107.21	ADH_zinc_N	402	535	1.30E-21
Glyur000503s00017757.3	PF00107.21	ADH_zinc_N	150	283	4.30E-22
Glyur000503s00017757.4	PF00107.21	ADH_zinc_N	165	297	1.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.410
SRR1783600	control	0.440
SRR1783602	moderate drought stress	0.068
SRR1811619	moderate drought stress	0.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.080
DRR006520	Root Summer glycyrrhizin high producing strain	0.117
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.871
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.672

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.837
SRR2868004	Drought Stress (root)	5.651
SRR2967015	Control (root)	1.291

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.599
SRR9715740	Leaf	45.862
SRR9715741	Leaf	31.690
SRR9715739	Root	0.609
SRR9715742	Root	0.812
SRR9715743	Root	0.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.526
SRR8749028	MeJA induced 9h	1.032
SRR8749029	MeJA induced 9h	1.215
SRR8749030	Uninduced	0.311
SRR8749031	Uninduced	0.219
SRR8749032	Uninduced	0.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.316
SRR8400027	Control - Root	2.517