Gene detail

Gene detail information of Glyur000503s00017756.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64050.1	9.00E-127	glutamate tRNA synthetase
NR	XP_003529003.1	1.92E-171	PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Glycine max]
COG	YP_004112198.1	4.00E-75	glutamyl-tRNA synthetase [Desulfurispirillum indicum S5]
Swissprot	tr\|Q43794\|SYE_TOBAC	4.00E-157	Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7L0Z1\|K7L0Z1_SOYBN	7.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G12340.2}

Sequence

Transcript Sequence

>Glyur000503s00017756.1
TAATAATAATAATAATATATTTGGTATTATATCATTCTCGAATCTCGACGCAGCCACCACTCCCAAGTGTTAACTGTTAAGAAAGCTTCGAATAGGGTGTGAGCAACTCTGGCTGGTACCAATTCATGGGACAAGTCTTAGACAAGTTACAGGGCAATGAGTGGAGGAAAAAGCAAATTAGAAAGATAACAGATCGAGTTTTCGGCAATGTGAAGAATCACATGCAAACGGAGAATTTGACTTTTGAAGATCTGTATATTGCTGTTTTACTTGTGTACAATGAGTTGTTTCTATGTGATAGTGATATCAATAAGCTTATTCCTGGTCCCCATTTCGATCCTCCATCAAAAGACAAAGTCAGAGAAATCATGCAGGACTGTGATATCAACTTGGATGGAGAAATTGATCGTGACGAATTTTTTGGTTTCATCCAGAAAATGACAGCTGATATATTCACTGTTGTTAGTCAAAAACTCATTGTCACTTTGGTTGTAGCACCAACAGTAGCAGTGGCAACAAAGAGAGCCACTGAAGGTGTCCCAGGTGTTGGGAGAGTGGTGCAAAGGTTACCCAATTCAGTTTATGCATCCCTTGTGACAATTGCAGCTGAACTAGAGAAAATGAAGGAGGTTGCTAAACAAATGCAGCTGCCTCCAGTATACACAGGTAAATGGGCCAATGCAACAAATGAGGAAGTAGAAGAAGAGTTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAGGTTTAAAAATCAATGACCTAATACGAGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGACAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGAATTTCCCATGCCTCACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGAGTGCAAGGATAAATAGTTCCAAAACATTAATATCTGCTGTCTCACAGTTCAGGGAAATGGGATATCTACCTGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTTTTCACCCTCGATAAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATAACACAAAATTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGTTGACCAATCTTATTGGAGAGCGCTGGAAGACATCTGGCTTGCTCACAGTATCAGCAGGGCCCTTTGTTGATATTCCTGGTAGTATGTGCATTATTGATGATTCCAACTTTCTACATGTTGCTGGCAGCAATGAAGCAGAATCTGTCATACAAGATAATCTTTCTGAATTTTCTGCCAGCCTCTTGGCTGCCTATGATAGTGGTGATCTGGGTGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00503	2918	9354	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01885	EARS, gltX	EC:6.1.1.17	Porphyrin and chlorophyll metabolism	map00860
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000503s00017756.1	PF00749.16	tRNA-synt_1c	162	384	2.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.059
SRR1783600	control	24.129
SRR1783602	moderate drought stress	17.320
SRR1811619	moderate drought stress	17.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.087
DRR006520	Root Summer glycyrrhizin high producing strain	28.706
DRR006521	Root Winter glycyrrhizin high producing strain	20.147
DRR006522	Root Winter glycyrrhizin high producing strain	19.204
DRR006523	Root Summer glycyrrhizin low producing strain	39.240
DRR006524	Root Summer glycyrrhizin low producing strain	39.222
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.922

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.248
SRR2868004	Drought Stress (root)	47.739
SRR2967015	Control (root)	38.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.623
SRR9715740	Leaf	26.470
SRR9715741	Leaf	32.916
SRR9715739	Root	11.223
SRR9715742	Root	18.662
SRR9715743	Root	17.950

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.828
SRR8749028	MeJA induced 9h	20.209
SRR8749029	MeJA induced 9h	9.866
SRR8749030	Uninduced	13.898
SRR8749031	Uninduced	5.820
SRR8749032	Uninduced	6.907

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.797
SRR8400027	Control - Root	36.614