Gene detail information of Glyur000502s00019275 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08500.1 | 1.00E-62 | early nodulin-like protein 18 |
| NR | AFK35096.1 | 6.38E-139 | unknown [Lotus japonicus] |
| Swissprot | tr|Q41001|BCP_PEA | 5.00E-06 | Blue copper protein (Precursor) |
| trEMBL | tr|I3S4A4|I3S4A4_LOTJA | 2.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:AFK35096.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00502 | 102970 | 105146 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000502s00019275.1 | PF02298.12 | Cu_bind_like | 43 | 145 | 2.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.960 |
| SRR1783600 | control | 2.053 |
| SRR1783602 | moderate drought stress | 5.343 |
| SRR1811619 | moderate drought stress | 5.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.988 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 75.704 |
| SRR2868004 | Drought Stress (root) | 45.192 |
| SRR2967015 | Control (root) | 46.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.916 |
| SRR9715740 | Leaf | 17.468 |
| SRR9715741 | Leaf | 19.576 |
| SRR9715739 | Root | 0.553 |
| SRR9715742 | Root | 1.454 |
| SRR9715743 | Root | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.450 |
| SRR8749028 | MeJA induced 9h | 36.156 |
| SRR8749029 | MeJA induced 9h | 33.653 |
| SRR8749030 | Uninduced | 22.175 |
| SRR8749031 | Uninduced | 8.078 |
| SRR8749032 | Uninduced | 5.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.504 |
| SRR8400027 | Control - Root | 12.947 |