Gene detail

Gene detail information of Glyur000502s00019274

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26760.1	7.00E-112	Cyclin B1;4
NR	XP_003617201.1	0	Cyclin [Medicago truncatula]
Swissprot	tr\|P34800\|CCN1_ANTMA	1.00E-151	G2/mitotic-specific cyclin-1
trEMBL	tr\|G7KCT9\|G7KCT9_MEDTR	0	Carboxy-terminal domain cyclin {ECO:0000313\|EMBL:AET00160.1}

Sequence

Transcript Sequence

>Glyur000502s00019274.1
ATGAGAAGCAGTAATCCAAGGGTCAGGATTGAAGGAAGAATCGACCGTTGGAGGACACCGAAGCGTTGCATTGCAGTCACTCACAACGAAACACACTGCTTTTTCATCATCATCGTCATTTTCATTCATAGTCACACACAGAGAGGAAGAGGAAGAGAGGAAGAGGAAATAGTGCAGTCGAGGAGGGTGGCGACCACTGAGGAAGAAGGAATAGGAGGAGAGACGAGGAACAGTCGTCTCCAGGTGTTTCTGTCNTCCCTCTTATCCACTCTTGGTGGTGTTTTTGGCTCTACTACTTCTCAAGAAGAATCCCACTCATTAACCATGGCTTCTAGAGCTATTGTTGCTCCTCCACACCAACAACCACAACCCAGAGGTGAGAATAATAATAAGCAAAAGAATGNAGCAGCAGAAGGGAAAAATAGACGGGTTCTACAGGATATTGGTAATCTTGTGGCCAAACAAGCAGAGCCCGGTGCTAATAATGTGTCCAAGCGCACCACAAGGAACTTTTGTGCTCAACTTTCGGCTAATGGGGAAGCCGCAGCTGAGAAGAACAAGAAGTTAAGNACTGAAATTGTGAATGGCACGCAAATAGTAGCAGCCAATGGGGCTAGTGTGGGGAGCTTTGTTGCTGCAACAAAGGTGGAACTAGCTCAGAAGCCAACAGAACCTGAAGTTATTGTCATCAGCTCTGATGATGACTCTGAGGAAGAAAANGAGAAACAAGCTGTTGTTAAAGGAAGAAAGACAAGAGAAAGATCTGCTAGGAAAAATGCCAAGGCCTTTAGTTCAGTCCTCACAGCTAGAAGCAAGGCTGCTTGTGGACTCAAGCCAAAGGATTTGGTAGTGAACATTGATGCCACTGACATNGACAATGAATTGGCTGCAGCTGAGTACATTGATGACATCTACAAGTTTTACAAACTCACTGAGGATGATGGGCGTGTGCATGATTACATGGCTTCACAGCCAGATATAAATGCCAAGATGAGATCAATCCTTGTGGACTGGTTGATAGAAGTGCATCGAAAATTCGAACTCATGCCNGAAACTCTCTATCTGACCCTTAACATTGTTGATCGATTCCTTTCCATGAAGGCTGTGTCTAGAAAGGAACTTCAGCTGGTTGGCATCAGCTCAATGCTTATAGCCTCCAAATATGAGGAAATATGGGCACCAGAGGTTAATGATTTTGTATGCATATCAGACAATGCCTATGTTAGAGAACAGGTTCTGGTCATGGAGAAAACAATCTTGAGAAACCTGGATTGGTATTTAACCGTTCCAACACCTTATGTCTTCCTGGTTCGGTATATCAAAGCCTCTATTCCCTCTGATAAAGAGATGGAGAATATGGTGTTTTTCCTTGCTGAACTTNCTCTGATGCACTATTCCCTTGTAACCTTGTACTGCCCTTCTATGCTTGCTGCTTCTGCTGTATATGCAGCAAGATGTACCCTTGAAAGGACCCCTTTTTGGACTGAGACTCTTAAGCACTACACAGGCTACTCTGAGGAACAACTAAGGGATTGTGCCAAGCACATGGTTTGCTTTCATGCTGCTGCTCCAGATGGCAAGCTTAGGGCAATTTACAAGAAATTCATCAGTTCAGATCGATGTGCTGTTGCTCTTCTCACTCCAGCAAAAAACTTGTCAGCACAGTCTTGAGTTAGCAGATTCTAGTTTAGGTTATTTTTTTTTTTGGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00502	95028	97975	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000502s00019274.1	PF00134.18	Cyclin_N	303	428	5.80E-45
Glyur000502s00019274.1	PF02984.14	Cyclin_C	430	548	2.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.350
SRR1783600	control	7.934
SRR1783602	moderate drought stress	3.298
SRR1811619	moderate drought stress	3.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.902
DRR006520	Root Summer glycyrrhizin high producing strain	7.861
DRR006521	Root Winter glycyrrhizin high producing strain	0.065
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	2.200
DRR006524	Root Summer glycyrrhizin low producing strain	2.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.729
SRR2868004	Drought Stress (root)	16.033
SRR2967015	Control (root)	21.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.545
SRR9715740	Leaf	0.412
SRR9715741	Leaf	2.114
SRR9715739	Root	3.035
SRR9715742	Root	3.544
SRR9715743	Root	3.433

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.377
SRR8749028	MeJA induced 9h	17.673
SRR8749029	MeJA induced 9h	15.884
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.045
SRR8749032	Uninduced	0.667

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.656
SRR8400027	Control - Root	32.924