Gene detail

Gene detail information of Glyur000501s00030933.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24660.1	0	transmembrane kinase-like 1
NR	XP_007140555.1	0	hypothetical protein PHAVU_008G122400g [Phaseolus vulgaris]
COG	YP_001192956.1	2.00E-19	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|P33543\|TMKL1_ARATH	0	Putative kinase-like protein TMKL1 (Precursor)
trEMBL	tr\|V7B3Z1\|V7B3Z1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12549.1}

Sequence

Transcript Sequence

>Glyur000501s00030933.1
CAGCTTTCCCAGGAAAGAGGCCCTCTTTCTTTGAACTTCTCACTCCCTTCTCACAACAACACTCCTTCCCCCTCACCCCCCCTCTCTCTCTCTCTGCTAGTTCATGGCGTTTCCAAAGTCTCTCTCTCTCTACATTTCCATGCCCTTCTTCTTCCTCTTCTTCCTCTTTTGCTTCTGCAAAGCCAGTACCACCACTACAAAGTCCTTGTCTTCTTCTTCTTCTTCTACTTCCTCTGATGTTGAGCTTCTCCTCGGAAAAATCAAAGCTTCACTACAAGGCAACGCAGACAACCTCGTTTTGTCTTCATGGAACACAACCATACCACTTTGCCAATGGAGAGGACTCAAATGGGTATTCTCCAATGGCACTTCTCTCTCATGCACTGATCTCTCTTCACCACAATGGACCAATCTTTTACTCTACAAGGACCCTTCTGTTCACTTGCTCTCTCTTCAGCTCCCATCTGCAAATCTCTCAGGTTCACTCCCAAGAGAGCTTGGGCAGTTCCCCATGCTTCAAAGTCTCTACCTTAACATCAATTCTTTGTGGGGTTCCATTCCCCTTGAGCTTGGTTATGGCTCCTCAATTTCTGAAATTGATTTGGGTGACAATATGCTTAGTGGGGATCTTCCCCCTTCCATATGGAACCTTTGTGACAGGCTTGTTTCCCTTAGACTCCATGGGAATTCACTCACTGGGTCTGTTTCTGAACCAGCATTGCCTAACTCCTCTTGTAAGAATTTGCAATCTCTTGATTTGGGTAGCAATAGGTTTTCTGGGGGTTTCCCTGAGTTTGTTACAAGGTTTGGTGGGTTAAAAGAGCTTGACTTGGGGAATAACATGTTTACTGGTACAATTCCTCAGGGCTTAGTTGGGCTTAGGCTTGAAAAATTGAATCTTTCCCACAATAACTTTAGTGGGGTGTTGCCTTTCTTTGGGGGAGGAGGATCCAAGTTTGGTGTGGATGCTTTTGAAGGGAACAACCCTTCCTTGTGTGGACCACCTTTGCCAAGCTGTGGTAGGAACTCCTCACTGAGTTCTGGTGCTGTTGCTGGTATTGTTATAAGTTTGATGACAGGAGCTGTTGTTTTGGCTTCTTTGCTGATTGGATACATGCAGAACAAGAAGAAGAAGGGAAGTGGGGAGAGTGAGGATGATGAATTGAATGATGAAGAAGATGATGAAGAAAATGGTGGTGGTAGTGCTGTTGGTGGTGGAGCTGGTGAGGGGAAGCTTATGTTGTTCCCTGGGGGTGAGAATTTGACACTAGAGGATGTGTTAAATGCTACTGGGCAAGTTATGGAGAAGACATGTTATGGGACAGCTTATAAGGCAAAGCTTGCTGATGGAGGAACCATTGCTTTGAGGTTGTTGAGGGAAGGTAGCTGCAAGGATAGGAATTCATGTTTGTCGGTTATAAAGCAGTTGGGGAAAATCCGCCATGAGAATTTGATTCCTTTGAGGGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATCTATGACTATCTTCCTCTCAGAACCCTTAATGAGCTTCTGCATGAAACTAAAGTAGGAAAACCAGTGCTGAACTGGGCTAGGAGACACAAGATTGCATTGGGTATAGCAAGGGGGCTAGCATATCTTCACACAGGACTTGATGTTCCTATCACTCATGCAAATGTAAGATCCAAGAATGTGCTTGTGGACGACTTCTTCGTCGCCAGGCTCACTGATTTTGGCCTCGACAAGCTGATGATCCCTTCCGTAGCCGATGAAATGGTGGCGCTCGCCAAGACCGACGGCTACAAGGCCCCCGAGCTTCAGAGGATGAAGAAATGCAACTCCAGGACCGATGTTTACGCATTCGGTATACTACTGCTGGAAATCTTGATCGGGAAGAAACCAGGGAGGAATGGGAGAAGCGGCGAGTTNGTGGACTTGCCCTCGATGGTGAAGGTGGCGGTTTTGGAGGAGACAACAATGGAGGTGTTTGATGTGGAGCTCTTGAAAGGGATAAGGAGTCCAATGGAAGATGGGTTGGTTCAGGCACTGAAGCTAGCAATGGGGTGCTGTGCACCAGTGGCATCTGTTAGACCCAGCATGGACGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGCCCTACAGAAACTAGAAGTGGAAGTATCACCCCATTTTGAGCTTTTAATGCACAACATGTTTAATCCAAACTATTGGGATTTTACATTTCTACTTAAGTTGTGTTTCCCTTTTTTCTCTCTCTCATCTGAATGTGAGGGTAAATGCATGATGATCTAGAGCTTGTTGTAGTTTTCTTTCTTGCTTTCTTTCTTTCTTTACCCCATAACTCTTTTGCATTTAGGTAGTCCCTATTGTTTTTAAAATCAAATATAATCACTTNCACAATTATGCAAATTCGTGCATTTAGAAGTTGTGCAGTCTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00501	74947	78117	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000501s00030933.1	PF13855.1	LRR_8	213	271	5.00E-07
Glyur000501s00030933.1	PF07714.12	Pkinase_Tyr	402	669	1.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.423
SRR1783600	control	7.446
SRR1783602	moderate drought stress	9.715
SRR1811619	moderate drought stress	9.683

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.551
DRR006520	Root Summer glycyrrhizin high producing strain	10.237
DRR006521	Root Winter glycyrrhizin high producing strain	0.818
DRR006522	Root Winter glycyrrhizin high producing strain	0.799
DRR006523	Root Summer glycyrrhizin low producing strain	14.808
DRR006524	Root Summer glycyrrhizin low producing strain	15.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.226

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.990
SRR2868004	Drought Stress (root)	18.077
SRR2967015	Control (root)	29.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.824
SRR9715740	Leaf	0.168
SRR9715741	Leaf	0.491
SRR9715739	Root	11.639
SRR9715742	Root	10.328
SRR9715743	Root	9.704

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.989
SRR8749028	MeJA induced 9h	2.903
SRR8749029	MeJA induced 9h	3.953
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.124
SRR8749032	Uninduced	0.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.179
SRR8400027	Control - Root	23.903