Gene detail

Gene detail information of Glyur000501s00030927.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24650.1	1.00E-117	AP2/B3-like transcriptional factor family protein
NR	XP_006586272.1	0	PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2 [Glycine max]
Swissprot	tr\|Q01593\|ABI3_ARATH	2.00E-158	B3 domain-containing transcription factor ABI3
trEMBL	tr\|Q68AN0\|Q68AN0_PSOTE	0	ABI-3 homolog {ECO:0000313\|EMBL:BAD42433.1}

Sequence

Transcript Sequence

>Glyur000501s00030927.1
ATGGAGTGTGGAGTGGAATTGCAAGGTGTAGATCTGCATGCAGCAGGGGTGATAACTGAGACAGACCCTATTGGTTTTGGAACCATGGATGATGCAGCAGAGACTTTGGGTGTTGCTGAGAGAGAGATGTGGCTAAACAGCACTGACCAAGATGATCTTTTGGGTGTGAATGATGTTGATGCATCATCCATGTTCTATGCTGATTTCCCTCCCCTACCTGATTTCCCATGCATGTCATCATCCTCATCCTCATCTTCCACACCNTCAGCACTACCCATGAAAACCACCATGGCATGTACATCCACCACCACCATAACAACCACAACATCCTCTAACAACAACTCCCCCTCTGCCTCTTCCTCCTCTGCTGCTTCTTGGGCTGTTCTGAAATCAGATGCAGAGGAAGATGCTGCNGCAGCAGCAGAGAGAATCAACAACAGGTGCAACCAACAACAAGGCTACAACATGCATCAGCAGCAGCACCATCAGCATGGTCTAGTAATGGATCATCATCATCATCATCATCATCATGCAGGAGCCTTGTCATCAACTGCATCCATGGAGATTATGTCTCAACACCAACCTGGTCTCAGTAATGTTAATGTTGGGGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTCTTGGAAGCCAATGACTTTTTTGACCCTGCATCTATTTTCCAGAGTGAAGAAGAAAACCAAAACCCCTTAGTGGAGTTCACACAGGAGGATCAGAAGGTGCCACAACAGCAACACCAACACCAACATGCAATGGAAGAATATACTACACCACAGCAAGTGACAGAGGAANATCATGGGGTTAATCTTTTGTGTGGTGATACTAATGCTATTGCTAACAACAACAATAATGAGGAAGAGAATATTCAAGGAGATGGTGTTGGTGCAGATGATGAAATGAGCATGGTGTTCTTGGAGTGGCTGAAATCTAACAAGGACAGTGTCTCTGCTAATGATTTGAGGAATGTGAAGCTGAAGAAGTCAACCATAGAGAGTGCTGCAAGGAGATTGGGTGGTGGGAAAGAAGCAATGAAGCAACTCTTGAAGCTTATTCTAGAATGGGTTCAAACCAGCCATCTCCAGAACAAAAGGCGCAAAGAGAACCACAACAACAATAGCAACACACTCTCAAATCTTCTCCCACAACAACAATTTCAGGACCAAAATGGTGCCAATGTGAACCAACCAATTAGTTCATTTGGACCTGAATCAAACACTTGTACTTTCAACCAAACAGTACCCTGGCCACCTTCTTTTGGGGCAGATCAANCCACCCCTTTCCTTGTGGCTCCACCAGTACCATTTTCACAACCCATGGTTGGGTATGTGAGTGACTCTTATAACACTTCAAATAACATGAATGCCACTCACAATCATAACCCTTATCAGCAACCTGCTGCTGCTGCTGAATATCAGATGCTGGAAACAGCACATTCATGGGCACCTTCTCAATNCACTGTTGCCTCACATTATAATCAGTCATTTGGGGAACACAACAACAACCTTCTCCAACCNGTGCCGGCTTTCGGAAGCGGCGGTTATGCTGGAAATCAGTATCCTTATCATCATCAGTTTTTTCATGGCCCTGGTGGTGGTGGTGGTGATAGGTTGATGAGGTTAGGACCCTCTGCTACTAAAGAAGCAAGAAAGAAGAGAATGGCAAGGCAGAGAAGGTTTATGTCTCATCACCACAGGCATCATAATAATCACCACCAGAATATTCAAGGTTCTGATCCACATGCAAGTGCAAGATTAGGTGATAATTGCACCACCACCATTGTAGCTGCTGCACCACCTCCTCATGCTGCAAACCCAGCCAATTGGATGTACTGGCAGACTATGGCTGGTGGCGCGGCTCCCTTGGCGCCGGTGGTTCCGGCTGAGCTGCCGCGGCAACCTGCGGCGGTGGACCGCCCGGCCATGCAGACTGCACAGAATTGTCACCAGGGTCGAGTTGCATCGGATAGAAGACAGGGTTGGAAGCCAGAGAAGAATTTGAGGTTCCTTCTTCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATTAAAGAGGCAGAAACCCATTTGCCAGAACTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACCTCTCGTGTTTGGAATATGCGCTATAGCACCAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAACACTGGGGACTTTGTGAAAGCCAATGGACTCCAAGAGGGGGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAAGGGACAAAACCAGAGGCCAAGAAGGCAGGAAAATCGCACAAAAACCAGCATGGGAATAATGCTGCAACTACAGCTGGTGCTTCTGTGGCTAATAATGGCACGCCATCTTCACCGAAGCCAAAAACTGAAAAGCTGGGAGTAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00501	18304	22076	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000501s00030927.1	PF02362.16	B3	681	775	9.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.043
SRR2868004	Drought Stress (root)	0.021
SRR2967015	Control (root)	0.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.025
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.014
SRR8400027	Control - Root	0.007