Gene detail

Gene detail information of Glyur000501s00030925.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48940.1	0	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_003532308.2	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Glycine max]
COG	YP_001192956.1	2.00E-66	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGV1\|RCH1_ARATH	0	LRR receptor-like serine/threonine-protein kinase RCH1 (Precursor)
trEMBL	tr\|I1KZD2\|I1KZD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G47220.1}

Sequence

Transcript Sequence

>Glyur000501s00030925.1
ATGGTTGAGTTTTTGATGCAATTGTCAATGTCAATGCCGAGGCAAACCTTGAGCAACCACCACCAAATGTCGAGGCAGTACCATCTTCAGTGTGTTCACCATGTTCTCCTCCTCTTTGCACTTCTCGTCCCTCTTTCTTTTGCTGCAAATGATGAGGTTAGTGTCTTAGTTTCATGGATGCACAGTAGCTCCTTATCCAACAATGTTGTTCCTTCAGCATTTTCTAACTGGAACCCTTTGGACACTAACCCTTGCAAATGGTCTTACATCAAGTGCTCTTCACAAAGCCTTGTTGTGACTGAGATAAACATCCAAACAGTTGAGTTAACCCTTCCATTCCCTTCCAACATCTCTTCCCTTCCCTTCCTTCAAAAGCTAGTCATTTCTGGTGCTAACCTCACTGNGCCTATCTCACCTGATATTGGGAACTGCCCTTTGCTCACAGTNATTGATCTTAGCTCAAATGGTCTTGTGGGTGGCATTCCTTCAAGTATTGGGAAGCTCAAAAACCTCCAAGACTTGACCTTGAACTCTAACCAGCTCACTGGGCCAATCCCAAAAGAGCTTGGTGACTGTGTTAGTCTTAAAAGCCTTGACATTTTTGACAACAACCTTAGTGGGGACCTTCCTTTGGAGCTTGGAAAGCTTTCAAATCTGCAGGTTATAAGAGCAGGAGGGAACAAGGACATTGTTGGGAAGATTCCAGATGAGCTTGGTGATTGCAGGAATTTGACAGTGTTGGGTCTTGCTGACACTAAAATCTCTGGTTCAATACCTGCTTCACTTGGTAAGCTAAGTATGCTTCAGACTATATCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAGATAGGAAATTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTCTCTGGTTCCTTGCCAAAAGAGCTAGGTAAGCTTCAGAAGCTGGAAAGGGTGCTTCTGTGGCAAAATAGTTTTGTTGGGAGCATACCTGAGGAAATTGGAAACTGTAGAAGCTTGAAGATTCTTGATGTCTCCTTGAACTCTCTCTCTGGTGGGATACCTCAGAGCTTGGGGCAACTCTCAAATCTTGAGGAGCTTATGCTAAGTAACAATAACATCTCTGGCTCAATACCACCTTCTCTTTCAAATCTTACAAACCTTATACAGTTGCAGTTGGATACAAATGAGTTGTCAGGTTCAATTCCACCTGAGCTTGGAAGGTTGTCAAAGCTCACAGTCTTCTTTGCTTGGCAGAACAATCTTGAAGGTGGCATTCCATCAGCATTGGGAGATTGTACAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGGCTGTTTAAGCTTCAGAATTTGACTAAGCTTCTACTAATCTCTAATGACATTTCAGGCCCCATTCCCCATGAGATTGGTAACTGCAGTTCCCTCATTCGACTCCGGCTCGTAGACAATAGAATCAATGGGGCAATACCAAGAGAAATTGGCTTCCTCAATAACCTCAGTTTCCTTGACCTTTCTGAAAATCATCTTACCGGGTCAGTACCAGTAGAGATTGGAAACTGCAAGGAACTGCAAATGCTGAATCTGAGCAATAACTCTCTTTCTGGTGCTTTGCCTAGTTATTTGTCATCTCTCACAAGGCTAGAGGTCTTGGATGTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTTACCTCACTTCTTAGAGTCACTCTAAGCAAAAACTCTTTCTCTGGATCAATTCCCTCCTCACTTGGCCAATGTTCAGGTATTCAACTGCTAGACCTTAGCAACAACATGTTCTCAGGGAGAATCCCACCACAACTGTTTCAGATTGAAGCACTTGATATTGCTCTAAACTTGAGTCATAATGCATTATCTGGAGTAATCCCACCAGAGATTGCAGCTCTGAACAAGCTGTCTGTCCTAGACCTTTCACACAACATGCTTGAAGGTGACTTGATGGTGTTTTCCGCGCTCGAAAATCTAGTCTCTCTCAACATTTCCTACAACAAGTTCACTGGTTATCTACCAGACAGCAAGTTATTCCACCAGCTATCAGCAACAGACTTGACTGGAAACCAAGGTTTGTGTCCTAATGGCCATGACTCATGTTTTGTTAGCAATGCTGCAATGACAAAGATGCTGAATGGCACTAATTCTAAGAGGTCTGAGATGATCAAAGTGGCCATTGGATTGCTCAGTGCCTTGACTGTTGCAATGGCAATCTTAGGAGTTCTTACAGCCTTTCGAGCGAGGAAAATGATTCGAGATGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACTCCATTCCAAAAGGTAAACTTTTCTGTGGAGCAAGTTCTGAAATGCTTGGTGGAATCCAATGTGATTGGAAAAGGGTGTTCAGGGATAGTTTATCGTGCGGAAATGGACAATGGGGATGTCATTGCTGTGAAAAGGCTTTGGCCTACAACATTAGCTGCAAGATATGATAGTCAAAGTGACAAGCTAGCAGTTAATGGAGGGGTTCGCGATTCCTTTTCGGCTGAGATAAAAACTCTCGGTTCGATTCGCCACAAGAACATTGTCAGGTTCTTGGGTTGCTGTTGGAACAGAAGCACAAGGCTGCTCATGTATGACTTCATGCCNAATGGGAGTCTAGGAAGTCTACTCCATGAGAGAAGTGGAAACTGCTTGGAGTGGGAGATCAGGTTCCGGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACATCATGATTGTGCTCCNCCCATTGTTCACAGGGACATCAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCACGGTCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCTGAGTATGGGTACATGATGAAGATAACAGAGAAAAGTGATGTCTACAGCTATGGTATTGTTGTGTTGGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGACTGGGTAAGACAGAAGAGAGGGGGAGTTGAAATAGTGCTAGATGAAAGCTTAAGGTCAGCTCGGCCGGAATCCGAGATCGAGGAGATGTTGCAGACCTTAGGTGTGGCATTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTGGTGGCAATGATGAAAGAGATTAGACAGGAGAGAGAGGAATGTGTCAAAGTAGTTAATCACAAGCTTCATGATGGATCTTCTGCATATGATGATCAACAAGAAAGTAATGTTCATTCCAATGAAGAACCANTGGCAATGATGAAACATGCATGCTTCCCAACAAGCAGCAGCAACAGCAACACAAGTCTGAATCTACATTACTCTCCCCATCATCCTCCAACACTA

Protein Sequence

>Glyur000501s00030925.1
MVEFLMQLSMSMPRQTLSNHHQMSRQYHLQCVHHVLLLFALLVPLSFAANDEVSVLVSWMHSSSLSNNVVPSAFSNWNPLDTNPCKWSYIKCSSQSLVVTEINIQTVELTLPFPSNISSLPFLQKLVISGANLTXPISPDIGNCPLLTVIDLSSNGLVGGIPSSIGKLKNLQDLTLNSNQLTGPIPKELGDCVSLKSLDIFDNNLSGDLPLELGKLSNLQVIRAGGNKDIVGKIPDELGDCRNLTVLGLADTKISGSIPASLGKLSMLQTISIYSTMLSGEIPPEIGNCSELVNLFLYENDLSGSLPKELGKLQKLERVLLWQNSFVGSIPEEIGNCRSLKILDVSLNSLSGGIPQSLGQLSNLEELMLSNNNISGSIPPSLSNLTNLIQLQLDTNELSGSIPPELGRLSKLTVFFAWQNNLEGGIPSALGDCTSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPHEIGNCSSLIRLRLVDNRINGAIPREIGFLNNLSFLDLSENHLTGSVPVEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVTLSKNSFSGSIPSSLGQCSGIQLLDLSNNMFSGRIPPQLFQIEALDIALNLSHNALSGVIPPEIAALNKLSVLDLSHNMLEGDLMVFSALENLVSLNISYNKFTGYLPDSKLFHQLSATDLTGNQGLCPNGHDSCFVSNAAMTKMLNGTNSKRSEMIKVAIGLLSALTVAMAILGVLTAFRARKMIRDDNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMDNGDVIAVKRLWPTTLAARYDSQSDKLAVNGGVRDSFSAEIKTLGSIRHKNIVRFLGCCWNRSTRLLMYDFMPNGSLGSLLHERSGNCLEWEIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEIVLDESLRSARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVVNHKLHDGSSAYDDQQESNVHSNEEPXAMMKHACFPTSSSNSNTSLNLHYSPHHPPTL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00501	7993	11856	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000501s00030925.1	PF13516.1	LRR_6	168	190	0.46
Glyur000501s00030925.1	PF00560.28	LRR_1	363	385	0.0057
Glyur000501s00030925.1	PF13855.1	LRR_8	411	470	1.50E-07
Glyur000501s00030925.1	PF00560.28	LRR_1	507	529	0.39
Glyur000501s00030925.1	PF12799.2	LRR_4	531	567	1.30E-06
Glyur000501s00030925.1	PF00560.28	LRR_1	675	695	0.6
Glyur000501s00030925.1	PF00069.20	Pkinase	807	1085	5.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.267
SRR1783600	control	0.268
SRR1783602	moderate drought stress	0.161
SRR1811619	moderate drought stress	0.172

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.250
DRR006520	Root Summer glycyrrhizin high producing strain	0.233
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.158
DRR006524	Root Summer glycyrrhizin low producing strain	0.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.963
SRR2868004	Drought Stress (root)	3.673
SRR2967015	Control (root)	4.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.018
SRR9715743	Root	0.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.459
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.173
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.297
SRR8400027	Control - Root	0.323