Gene detail

Gene detail information of Glyur000500s00018152.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01830.2	0	CHASE domain containing histidine kinase protein
NR	XP_003530935.1	0	PREDICTED: histidine kinase 4-like [Glycine max]
COG	YP_006373193.1	2.00E-83	multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q9C5U0\|AHK4_ARATH	0	Histidine kinase 4
trEMBL	tr\|I1KQE9\|I1KQE9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05370.1}

Sequence

Transcript Sequence

>Glyur000500s00018152.1
GATTTGTGATTGCGATTTCCAGTTTTCCATTTTTCTCTCTCCTCTTTCTCTTTCTCCCTCCGCTGTTCTAATTCTTTAACGTTGGAAACACACACACACACACACAGTACAAGGAAACGAGGAAGAAGTGAGAAAGACCCGGGTGACAAAGAAGATTCAGATTGCGTTACAGTGCTGTGGTTCAAGTGGAGAGTGTGAAAAAGTTTCAATTTTTAGGTTCATAATTTCATNTTCCAAAGTGGGAAAGCAGGGAACTGGGTNGTTGGTTCACTCTCACTGCTCCATATAAAGCCCTTTTCCTTCATTCTTTGAAAGACAAGGTTTCTTCTCAAGCTATATCAACTTGAACACGAGCTCGCCGAAAAACGATGCTAACTTGAGGAGGAGACACTGATGGGGTGAAAGAGAAATGCATTAGTACTGTTGCAGAGAAGAAGAAGAAGAAGAAGAGAGAGAGCTTGACTTGACTACTGCAGTATATTTTTTTATGNGAGTGTGTGAAGTAGAAGGGAGACAACAGGGTATCTGGGAAAATCGTAGAAATTCGATTTAGTTTAGTGTTATGTGCTAAATTAAACAAAGAAAAAGTNAACAATATAAAGATTAGAAAAGTAACAAAAAACATATAAAGGGTATTAAAAAATAAACCAGTACAGAAAGAGAGAGGAGCAGCAGATCAAGACCAGCCAAACTGGTTCCAATTGTTCATTGTACAGCGACCTTCTCTTTCATGTACAGATATATATGAAGAAGACTGCAGAAAGATAACACGGAGCTCAGAAAAACTGAGTTGGTGATGGGTCTGAGTTTGAAGATGCAGAGCCATCACCCTGTGGCTTTGAGGATACATGAGCAAGCGGGGAGCAAAAGAAAATACACCTTCATTCAGGCCCACAGGGCTTGGCTTCCCAAGTTTTTGCTGCTGTGGATCCTGCTAATGGCTCTGATTGGCTGTTGCATCTACAGCAAAATGGATGCTGACACCAAAGTCAGAAGGAGAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCTAGAATGCTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTTCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAAACCCTTCTGCCATTGACCAGGAAACCTTTGCAGAATATACAGCCAGGACGGCATTTGAGCGGCCATTACTNAGTGGGGTGGCCTATGCACAGAGGGTGGTTAACTTGGAGAGAGAGAGATTTGAGAAGCTACATGGATGGGTTATAAAGACAATGGAAAGAGAACCTTCACAGGTTAGGGATGAGTATGCACCCGTGATATTTGCGCAAGAGACTGTCTCCTACCTTGAGTCTATTGATATGATGTCTGGGGAGGAGGACCGAGAAAACATTTTGAGGGCTAGAGCCACTGGGAAAGCTGTTCTGACTAGCCCTTTCAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCCAAGCTCCCTCCAAACCCAACAACAGAAGAGCGCATTAAAGCAACAGCAGGATATGTCGGAGGATCCTTTGATGTCGAGTCCCTTGTGGAGAATTTACTTGGTCAACTTGCTGGTCACCAAGCAATTTTGGTCAACGTATATGATATCACAAACTCTACTGACCCCCTAATAATGTATGGCAACCGAAAGGAAGAAGGCGATATGTCTCTNGCCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACGGCATTCCTATTCTTTGTGATTCTTTTATTAGTGGGTTACATTTTATATGGCGCTGGAAATCACATTGTCAAAGTAGAGGATGATTTCCATGAAATGCAGGAATTAAAAGTTCGGGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACAGAATTGAGTTCAACCCAACGGGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTGCTTGACAGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCATTTGACCTTCGTTCCATACTCGATGATGTCCTTTCTCTTTTCTCTGAGAAGTCTAGGCACAAAGGTTTAGAGGTATGCCTAATCATTGCCGAACCTATTGTGAAGGCCAGTACAATTCCAGATATTGTTATGGGAGATCCTGGGCGATTTAGACAAATAGTGACAAATCTTGTTGGCAACTCAGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATCTGGCTGAAAATAGAAAGTCCACAATGAATGGAAATTTTGAGACTTTTCGAAANGGAGGATCTGATGAAGTTGTGCATATATCTGGTGGTTATAGTTCCAAAACCCTAAGTGGATGTGAAGCAGCTGATGAGCGGAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTCTGTGATGCTTCCACTAAAAAGGTGGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGCGTGGAGGACACTGGAATCGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACTTCTAGAAACTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCCTAGTGGAACTAATGGGTGGTCAGATAAGCTTCATAAGCCGACCACAGGTTGGAAGCACATTTTCGTTTACTGCAGATTTTGGAACGTTTGTGAAGAATTCAATAACTGACATGAAGAAACTTAATTTCGAAGATCTACCTTCTAGTTTTAGAGGGCTTAAAGCCATTGTGGTTGATGGAAAGCCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACAAGCTAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGGATTATTCCAGCCTGATATTATTCTTGTTGAGAAGGATTCATGGGTTTCTGTAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAATGGACATATGTTTAAGATGCCTCAAATNATCCTTCTTGCGACCAATATTAGTAATGCTGAATTTGATAAAGCTAAATCCGCNGGTTTTAGTGATACAGTGATCATGAAGCCACTGAGAGCCAGTATGGTGGGTGCTTGTCTTCAGCAAGTTTTGGGGACGGGTAAGAAGAGACAGCTAGGAAAAGACATGCATAATGGTTCCACTTCNGTTCGAAGCCTTCTTTGTGGGAAGAAAATCTTAGTGGTTGATGACAATGTGGTGAACCGGAGGGTGGCTGCAGGTGCGCTAAAAAATTTTGGAGCTGAGGTGAAGTGTGCAGAAAGTGGCAAATCTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCANATGCCAGAAATGGATGGGTTTGAAGCTACTCGTCGAATTCGGATAATGGAAAGCAAGGCAAATGAGCAGCAGAAGAATGGCGAATCNGGGGAAGGGAATGGCAGGAAAAGTGAGTTCCATATACCGATATTGGCCATGACAGCTGATGTGATCCATGCTACATACGAAGAGTGCTTGAAATGTGGGATGGACGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCCAAGTTTTTCAAGACCAAGCCTACCTCAGACACATGACACAAATGCTTGAACAACTGGCCAAAGCAACTTAAGTTAGCATGTTCACCACCACCACNACTACTACTACTACTACTACACTACTGGCATTTTTCACAATTTTGCTGGTAACTAATGCTTTCATGCAGAAGAGAGAGCAACATACAAGCATGCATGCGGTGATCAATTCTAACCAGCTCAAGTTTGAGTGGGACAAGATATGTNTACACCACAATATAACACTCTCCATCCCCAGCCTGTGTACAGATTCTCCCAAGGGATGAGCGAAATTATGTAAATTCAATATTTTTCTTCTTCTGCATCTGATCAATACTTCCCTGTTAGAAGGGTTTCCCTATTTTTATTTTTATTTTGTAAAATTGTCTCGTATAAGATTTGCTTAGGTTTTTATTATATATATATATTCAGAAGCAAAAA

Protein Sequence

>Glyur000500s00018152.1
MGLSLKMQSHHPVALRIHEQAGSKRKYTFIQAHRAWLPKFLLLWILLMALIGCCIYSKMDADTKVRRREVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNLERERFEKLHGWVIKTMEREPSQVRDEYAPVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPPNPTTEERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDPLIMYGNRKEEGDMSLAHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLEVCLIIAEPIVKASTIPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSTMNGNFETFRXGGSDEVVHISGGYSSKTLSGCEAADERNSWDNFKHLIADEEFFCDASTKKVASSESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQISFISRPQVGSTFSFTADFGTFVKNSITDMKKLNFEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTSGLFQPDIILVEKDSWVSVEDGIFNVWQLDWKQNGHMFKMPQXILLATNISNAEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKDMHNGSTSVRSLLCGKKILVVDDNVVNRRVAAGALKNFGAEVKCAESGKSALEMLQLPHNFDACFMDIXMPEMDGFEATRRIRIMESKANEQQKNGESGEGNGRKSEFHIPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKTKPTSDT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00500	65384	73453	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14489	AHK2_3_4	EC:2.7.13.3	Plant hormone signal transduction	map04075

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000500s00018152.1	PF03924.8	CHASE	109	293	1.40E-40
Glyur000500s00018152.1	PF00512.20	HisKA	381	446	7.40E-19
Glyur000500s00018152.1	PF02518.21	HATPase_c	499	682	3.90E-33
Glyur000500s00018152.1	PF00072.19	Response_reg	867	934	1.60E-13
Glyur000500s00018152.1	PF00072.19	Response_reg	956	998	4.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.339
SRR1783600	control	7.363
SRR1783602	moderate drought stress	7.472
SRR1811619	moderate drought stress	7.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.904
DRR006520	Root Summer glycyrrhizin high producing strain	22.721
DRR006521	Root Winter glycyrrhizin high producing strain	0.229
DRR006522	Root Winter glycyrrhizin high producing strain	0.235
DRR006523	Root Summer glycyrrhizin low producing strain	14.066
DRR006524	Root Summer glycyrrhizin low producing strain	14.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.646

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.085
SRR2868004	Drought Stress (root)	20.340
SRR2967015	Control (root)	23.768

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.097
SRR9715740	Leaf	1.220
SRR9715741	Leaf	1.860
SRR9715739	Root	1.472
SRR9715742	Root	14.083
SRR9715743	Root	13.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.458
SRR8749028	MeJA induced 9h	4.564
SRR8749029	MeJA induced 9h	3.424
SRR8749030	Uninduced	3.716
SRR8749031	Uninduced	2.458
SRR8749032	Uninduced	1.723

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.747
SRR8400027	Control - Root	29.656