Gene detail

Gene detail information of Glyur000500s00018146.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73740.1	4.00E-90	UDP-Glycosyltransferase superfamily protein
NR	XP_003524354.2	0	PREDICTED: uncharacterized protein LOC100808262 isoform X1 [Glycine max]
COG	YP_001194161.1	6.00E-68	UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase [Flavobacterium johnsoniae UW101]
trEMBL	tr\|K7KRG7\|K7KRG7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34250.2}

Sequence

Transcript Sequence

>Glyur000500s00018146.1
AGAAACTTGTTTTTGTTAGGAAGTTGTCATTTATTTTGCAAGACAACAGAGATTCATAGAGCAGGGTGGTTGGTTGGANGTTGGAACTTCTACAGGTCAGTTAGCCAGTTAACTAACAGTAACAGAAATCAGAATTCTGAGTTTCAACTTTTCAATGTTCATGGCCACTCCCACTCCTACCCTTTCCCTCCTCACACACTTTCCCAAGTTCCAAGCTTTCCTCCCTTCCCATCTCGTCGCCACGTGGCAACCGGCCAGGCACGGTCAGAGTCAACTCTCACGCTGCCTGTCATCATCCAACGACGACGACGACACCCTCCGCGTGGTGTTCGCGGGCGGNGGCACCGGCAGCCACGTGTACCCTGCAGTGGCCATTGCGGAGGAGCTCAAAACGGAAAACCCCACGTGCGAGTTTCTGTTCATCGGGAGCCCCAACAGCATGGAAAGCGCCGCAATAACCTCCGCAGGTTACAACTTCGCNTCTGTCCCTTCCCTCACACTCTCTCCCCCCTCCATCTTCTTCCCTTACCGCTTCTTGAAGTCTCTGATCCAATGCTCTCGCCACCTCCGAGACTTCAACCCCCACCTCGTCGTCGGCACCGGTGGCTATGTCTCTTTCCCCGTTTGCCTCGCCGCTAAGCTCACAGGCATCACCTTTGTGATCCATGAACCCAACTCTGTCCCTGGCTTCGCCAACTCTCTTCTTTCCTCCTTCGCTAGCCTCATCTTCGTTGCTTTCAACTCGACCCTTGATAGCTTCCCGAGGAACAAGTGTGTGGTGTGTGGGAATCCCGTGAGGCTGTCTCTCAGGAACCCTGTTTCCAAGATCGATGCAAGGTCTTATTTTTTTCCGAGCACTATAAGTGGGTGTGAAGATTCTGAGGGGGGATCATGCAACAGGGTTTTGTTGATTCTTGGTGGATCTTTTCGGGCCAACGCTGTTAACATTGCCATGCTGAATCTGTATTATCGGATTCTGAGACAGGACAGTGGCTTGTATATTATATGGCAAACTGGGGTTGAAGCATTTGATGAAATGGACAGCCTTGTCAAAAGTCATCCACGCTTGTATATGACACCGTTCATGTATCGTATGGATTTGGCATATGCTGCTGCAGACTTGATTGTTTCTAGAGCGGGTGCAATGACTTGCTATGAAATATTGGCGACTGGGAAGCCGTCTATCCTGATACCATCACCAAATTTCTCTGAGGGGAATCAGTTCAGAAATGCTTCCTTGATGGCAGACTTAGCTGGCGTGACAGTTATAACTGAGGATGAGCTGGACTCAAGTACACTAGCAATTGCAATTGAAGAGATTTTAACTGCAAACCCCAATGCTTCGGCTGAGATTGCAAAACACATTCTCTCTCTCGAGAACAAAGATGAAGGCTTCAATAGCCTTAGCCCGTCATCCGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00500	13115	16898	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02563	murG	EC:2.4.1.227	Peptidoglycan biosynthesis	map00550
			Cell cycle - Caulobacter	map04112
			Vancomycin resistance	map01502

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0019277 UDP-N-acetylgalactosamine biosynthetic process

GO:0030259 lipid glycosylation

molecular_function

GO:0016758 transferase activity, transferring hexosyl groups

GO:0030246 carbohydrate binding

GO:0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000500s00018146.1	PF03033.15	Glyco_transf_28	57	192	1.20E-26
Glyur000500s00018146.1	PF04101.11	Glyco_tran_28_C	251	402	1.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.565
SRR1783600	control	4.831
SRR1783602	moderate drought stress	4.556
SRR1811619	moderate drought stress	4.434

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.449
DRR006520	Root Summer glycyrrhizin high producing strain	4.552
DRR006521	Root Winter glycyrrhizin high producing strain	4.130
DRR006522	Root Winter glycyrrhizin high producing strain	3.797
DRR006523	Root Summer glycyrrhizin low producing strain	5.613
DRR006524	Root Summer glycyrrhizin low producing strain	6.270
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.420
SRR2868004	Drought Stress (root)	11.388
SRR2967015	Control (root)	11.258

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.572
SRR9715740	Leaf	4.908
SRR9715741	Leaf	10.831
SRR9715739	Root	1.950
SRR9715742	Root	5.958
SRR9715743	Root	4.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.289
SRR8749028	MeJA induced 9h	1.418
SRR8749029	MeJA induced 9h	0.856
SRR8749030	Uninduced	1.772
SRR8749031	Uninduced	0.454
SRR8749032	Uninduced	0.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.775
SRR8400027	Control - Root	9.667