Gene detail

Gene detail information of Glyur000499s00027922

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19960.1	myosin 1
NR	XP_003556592.1	PREDICTED: myosin-1-like [Glycine max]
Swissprot	tr\|Q9LHE9\|MYO1_ARATH	Myosin-1
trEMBL	tr\|I1NCW2\|I1NCW2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G00320.1}

Sequence

Transcript Sequence

>Glyur000499s00027922.1
CAAATTATTTTCATTTTCTCTCTCAACTTTCTCGGAAACCAAACAGACATCCCTTCCTTTTGTCAGAGACTCTGTTGAGTTTTCTCTGTTCTGAATGCTCTCACTCACTTCTTCTCCATTCTGCAAGATCTTCCTCTTCCTCTCCTTCTTCTTCTGCTCCGTTACGCTTCTTTCTGCTTCATCAGTTGTTTCCACACGCTGAACAGAGCTTCATCTGCTTCACTGACGGAGCATGTGCCTGATTCTCTAAGGTTCCTTCCTGGATCGGCTCAACTGCAATCGGAGAAACTAGTAATAGATGTTTCGGGGGAAATTGAAGGATCTGTTTGTGCAACCGTTGCAATAATTGGGTTNAGTGGGAGTGAGGCTTTGTGTCAGATTGGTGATTTTGAGTTTTTACAGATTAGGGTGAGAGCCGTTTACAGGAAAATGTCTCCGATATCCAATGTCCTGCCTGCTCTCCAGCCTATCAAATCGCTGCCTCCTGGTTTCAAGGTTATTGGTAATCTGACCCCTGATCTAATGGAAAACCGGGGAGATGCTAAATTGAGAAGCACTAATGTGCTTGGATCAAGTAGTCCTGAAAATGGTGCTCTACCTGGAGAGGTTTCCCAGGAAGGTCAGGTCCGAGCGGGTGATATGGGTCTTTTCGATGAGGACCTGGCTTATAGTGGAAAAGGTGTATCATTAGAGGATGGGCCATCAACTGCTGATGAAGACTTAGAATCTGTTCCTCTTCCCTTCCAGTCGATTTCGACGTTCTCTAGGGAACGGAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAATATAATAACAACTTCTGGANCTGAATCTGTCATTTCACTGCCTGATGGGAAGACAAAAGCAGGACCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCCGAGAAATGACACGGGATGAAGTTAATCAATCTATAATCATAAGTGGTGAGAGTGGAGCTGGGAAGACTGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCGAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGGAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCTGGTGCTAATATTCAAACATGGAAGCTAAATCTACAAAATGCAGAAGACTATAAATATTTGAGGCAGAGCAGTTGTTATTCAATTACTGGTGTTAATGACGCAGAAGAGTTTCTAACAGTCATGGAAGCTCTTGATGTTGTTCACATTAGTAAAGAAGACCAAGAGACTGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGGAACATATCATTTACTGTGATTGACAATGAAAACCATGTCCAAGCTATAGAAAATGAGGGTCTGTTACACGTTGCCAAATTGATTGGATGTGATGTTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAGAAGTTGACACTACCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCTATATATGCATGCCTGTTTGATTGGTTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATTCTAGATATATACGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGATAACCAAGACTGCCTTAATCTTTTTGAGAAGGTTGTTGACGAACTCGTTCTGGACTATCAACATGAACAGAATTGTGAGAGGCCACTGGGGTTGTTATCCCTGTTAGATGAGGAGTCCACTTTTCCAAATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTAAATTCTAAGTCGTGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTGTGTCATTATGCCGGAGAGGTCACCTATGATACAACTGGATTTCTGGAGAAGAACAGGGACTTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGCACATGTCATCTTCCTCAAATATTTGCATCCCATATGCTTACACAGTCTGAAAAGCCGGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAGTTGTTCCAACTGATGCAACGATTAGAGAGCACAACTCCACATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTACTGCAACAGCTAAGATGCTGTGGGGTCTTGGAAGTGGTTAGAATATCAAGATCAGGCTTTCCAACGAGAATGTCTCACCAAAAGTTTGCAAGAAGATATGGTTTTCTTCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATTCTCCATCAATTTAATATTTTGCCTGAGATGTATCAAGTCGGCTACACAAAATTATTTTTCCGGACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTTCATGGCATTTTACGTGTCCAGAGTTGCTTCAGGGGTCACCAAGCTCGTTGTTCTCTCAAGGAGTTTCGGGGAGGAATCACTACTCTGCAGTCATTTATTCGGGGAGACAAAACTAGAAAGGCATACACAGCTTTGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGCGGATAAAAGCAATGTTTGTAAGAAACAGAACAAGGACTATTAGTGATGCTGCAATTGTCATACAATCAGTTATCCGCGGATGGTTAGTCAGAAGATGCTCAGGGGATATTGGATTTTTAAAATCTGGGGATATGAAGACAAAAGAGTCAGATGAGGTTCTGGTCAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAGGGCNGAAGCTGCCCTGAGAGAAAAAGAAGAGGAAAACGACATCCTTCACCAACGTATCCAACAATACGAGAGCAGATGGTCTGAGTATGAATTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCGCTACAATCGAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATTGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGACGAGCGGGATTCCAACTGGGATGTTGGAAGTACTCACAGGCGCCAAGAAAGCAATGGGACAAGATCAACGAGTGCTGGTTTGAGTGTTATAAGTCGGCTGGCCGAAGAATTTGAGCAGAGGAGTCAAGTGTTTGGTGATGATGCCAAGTTCTTGGTTGAGGTGAAATCTGGTCAAGTGGAAGCAAGTATGAACCCAGATCAAGAACTTAGAAGATTAAAACAGATGTTTGAAGCTTGGAAAAAGGAGTATGGAGCAAGATTGCGGGAAACAAAGGTGATTTTAAATAAACTTGGAAGTGAAGATAATGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGATTTCAACTTTTTTTACACTTCTATTTTATTTTTATTTTATTTTTTGGTTCGGCTTTGGTCTATGCACTGTTTGAAGGGCATTGCCAACTAAATATCTGAAAATGAGGAAAATNCAATAGGAAAAGGTAAAAATAGAAAGGATAGGAAAATTCCACGGATGGAGTTATTTTACTACTGTTGGGTTAGTTGTTGCTAGCCACCTTTCTGCATGAGTTACCAGTCTCAGTCTCTTGCAAATACTTNGCAAAGGACTCATAATGGGTCTGATCTTTCTCTAGATCTGATATGGCTGGAACTCTGTAGCACCAGCTTGTCAATTTTTTATTTTTACTTTTATTTTTTTTGCGTGAGTTGTGAAGTAGTATGTATACTGCAAACCTTAGTGATTCATGCACCTTGAATTGCATGTCAAATATGTTCTGGAGGCCCAAAAATGCAATAT

Protein Sequence

>Glyur000499s00027922.1
MSPISNVLPALQPIKSLPPGFKVIGNLTPDLMENRGDAKLRSTNVLGSSSPENGALPGEVSQEGQVRAGDMGLFDEDLAYSGKGVSLEDGPSTADEDLESVPLPFQSISTFSRERRWSDTTPYASKKKLQSWFQLPNGNWELANIITTSGXESVISLPDGKTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMTRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTWKLNLQNAEDYKYLRQSSCYSITGVNDAEEFLTVMEALDVVHISKEDQETVFAMLAAVLWLGNISFTVIDNENHVQAIENEGLLHVAKLIGCDVEDLKLTLSTRKMKVGNDNIVQKLTLPQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKVVDELVLDYQHEQNCERPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARCSLKEFRGGITTLQSFIRGDKTRKAYTALLQRHRAAVIIQKRIKAMFVRNRTRTISDAAIVIQSVIRGWLVRRCSGDIGFLKSGDMKTKESDEVLVKSSFLAELQRRVLRAEAALREKEEENDILHQRIQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDSNWDVGSTHRRQESNGTRSTSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASMNPDQELRRLKQMFEAWKKEYGARLRETKVILNKLGSEDNALEKMKKKWWGRRNSTRIN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00499	24585	44991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016459 myosin complex

molecular_function

GO:0003774 motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000499s00027922.1	PF00063.16	Myosin_head	299	774	1.40E-133
Glyur000499s00027922.1	PF00612.22	IQ	792	808	0.071
Glyur000499s00027922.1	PF00612.22	IQ	862	878	7.70E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.179
SRR1783600	control	10.099
SRR1783602	moderate drought stress	7.941
SRR1811619	moderate drought stress	7.777

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.319
DRR006520	Root Summer glycyrrhizin high producing strain	11.253
DRR006521	Root Winter glycyrrhizin high producing strain	3.300
DRR006522	Root Winter glycyrrhizin high producing strain	3.169
DRR006523	Root Summer glycyrrhizin low producing strain	10.848
DRR006524	Root Summer glycyrrhizin low producing strain	10.823
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.351
SRR2868004	Drought Stress (root)	17.339
SRR2967015	Control (root)	16.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.712
SRR9715740	Leaf	11.886
SRR9715741	Leaf	12.148
SRR9715739	Root	0.844
SRR9715742	Root	8.089
SRR9715743	Root	7.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.989
SRR8749028	MeJA induced 9h	5.530
SRR8749029	MeJA induced 9h	3.578
SRR8749030	Uninduced	2.502
SRR8749031	Uninduced	2.767
SRR8749032	Uninduced	1.609

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.498
SRR8400027	Control - Root	18.067