Gene detail

Gene detail information of Glyur000498s00016179.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10780.1	6.00E-155	F-box/RNI-like superfamily protein
NR	XP_003547543.1	0	PREDICTED: F-box protein At1g10780-like [Glycine max]
Swissprot	tr\|Q9SAC4\|FB2_ARATH	0	F-box protein At1g10780
trEMBL	tr\|I1MDP3\|I1MDP3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05200.1}

Sequence

Transcript Sequence

>Glyur000498s00016179.1
ATGGAATCTCTCCCCGATGCCATACTTCAATACATCTTGTCACATATCAATAATGCCCGCGATGTGGCATCTTGCNATTGTGTTTCTAAGCGATGGAAGGACTCAATGGCTTATATCAGTAGTCTCCACTTTCCTCGCAACTCATTTGATAACCCTTCTGGCAGTGAAAGCCGTGACAACATTGTGAAAAGAATGGTATCAACAGTTGTGCAGTTAGAAGAGCTAGTTGTACTCAGTCCTTTCTCCCCTTCTGGCCTTGCTTCATGGCTATCACTTTTAGGTCTCTCTCTTTCTCGGCTCGAGCTTCGAATGGACAACCTTGCTGACAATCAGGCCCCTTATGAAAACCCATCAAAATTAGATTGCATTGGTGCGGCAAGGAATTTGGAATCTCTAAAACTGTGGGGTGTCTTAATGATACATTCCCCTAAATGGGATGTGTTCCAAAATCTTAGGACCCTCGAAATAGTTGGGGCAAGATTGGAGGATCGTGTATTGACCGCGTTGCTTCGGTCATGTCCATGTCTGACAAGGTTGTTACTCCTTGGATGTGAAGGGGTTAAATCAATTTCAATTGACCTGCCATTTTTGGAGCAGTGTAAGCTGGACTTTTATGGTCAAGGGAACTGTTCACTTCAGCTAACCTCCCCAAAAATTGAATCTCTTGAGGTGCAAGGCTGTAGTTGGATTAGGGTCCCTGAAACCAAGCATTTGAGGAATCTTTCAATTACCAATAGTGCAGGGAGAGTATACATGATGGATTTCGGAAACCTTGCATCCCTGGAGTTCCTATCTATGAAGGGGGTCCAATGGTGCTGGTATGCAATATGCAAAATGCTGGCATTGGCAAGTGAGGTGACGCATCTTCATATGAAGCTTGAATTCACTGGGGACTATGGGGCACTTCATCCCTTTCCAGAGATTGATTTTGTTGATTTTTTCAACAGCCATCCCAAGCTGCGCAAGTTTGATATCCATGGAGCCATGTTTGCAGCATTATGCCAGAGGAACAGTCTAAAACAAGTGCATCCGGGATTTGTGATTCCATGTTTGGAGGAGGTTGTGATCACAGTGAGATCACCACTGAATGCTGCACAGAAAATGAGAACTCTTGAATCCTTGTTAAAGCACGCGGAAAATCTAAGGACAATGGTTATCAAGATTCTTCAGATGAAGAGCTCTCAGAGAAGTGCTGATGCTTTTTTTGATGAGATTTTCCGGTTCAGATACATGAATCATGAGATCGTTCGAATAGAATAAAGCTTGATGCATTTTGTTGATGCAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	153040	154567	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016179.1	PF12937.2	F-box-like	2	34	5.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.119
SRR1783600	control	1.033
SRR1783602	moderate drought stress	0.770
SRR1811619	moderate drought stress	0.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.606
DRR006520	Root Summer glycyrrhizin high producing strain	0.665
DRR006521	Root Winter glycyrrhizin high producing strain	0.253
DRR006522	Root Winter glycyrrhizin high producing strain	0.253
DRR006523	Root Summer glycyrrhizin low producing strain	0.096
DRR006524	Root Summer glycyrrhizin low producing strain	0.171
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.635
SRR2868004	Drought Stress (root)	1.017
SRR2967015	Control (root)	1.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.815
SRR9715740	Leaf	0.049
SRR9715741	Leaf	0.103
SRR9715739	Root	0.159
SRR9715742	Root	0.456
SRR9715743	Root	0.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.919
SRR8749028	MeJA induced 9h	1.135
SRR8749029	MeJA induced 9h	0.387
SRR8749030	Uninduced	0.486
SRR8749031	Uninduced	0.509
SRR8749032	Uninduced	0.470

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.359
SRR8400027	Control - Root	2.987