Gene detail information of Glyur000498s00016177 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26070.1 | 4.00E-46 | Plastid-lipid associated protein PAP / fibrillin family protein |
| NR | XP_004485505.1 | 5.61E-72 | PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LU85|PAP4_ARATH | 2.00E-56 | Probable plastid-lipid-associated protein 4, chloroplastic (Precursor) |
| trEMBL | tr|C6T0F2|C6T0F2_SOYBN | 3.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G19810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00498 | 148364 | 150954 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000498s00016177.1 | PF04755.7 | PAP_fibrillin | 59 | 151 | 1.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.853 |
| SRR1783600 | control | 4.025 |
| SRR1783602 | moderate drought stress | 6.472 |
| SRR1811619 | moderate drought stress | 6.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.303 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.476 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.269 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.021 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 76.823 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.576 |
| SRR2868004 | Drought Stress (root) | 4.944 |
| SRR2967015 | Control (root) | 7.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.722 |
| SRR9715740 | Leaf | 105.566 |
| SRR9715741 | Leaf | 91.180 |
| SRR9715739 | Root | 0.950 |
| SRR9715742 | Root | 2.753 |
| SRR9715743 | Root | 2.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.475 |
| SRR8749028 | MeJA induced 9h | 6.391 |
| SRR8749029 | MeJA induced 9h | 2.464 |
| SRR8749030 | Uninduced | 4.016 |
| SRR8749031 | Uninduced | 1.240 |
| SRR8749032 | Uninduced | 1.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.320 |
| SRR8400027 | Control - Root | 10.276 |