Gene detail

Gene detail information of Glyur000498s00016170

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06470.1	3.00E-54	GNS1/SUR4 membrane protein family
NR	XP_004485512.1	3.44E-122	PREDICTED: putative elongation of fatty acids protein DDB_G0272012-like [Cicer arietinum]
Swissprot	tr\|Q9SYY4\|ELO3L_ARATH	1.00E-26	Elongation of fatty acids protein 3-like
trEMBL	tr\|V7BR73\|V7BR73_PHAVU	1.00E-108	Uncharacterized protein {ECO:0000313\|EMBL:ESW20492.1}

Sequence

Transcript Sequence

>Glyur000498s00016170.1
ATGAGTAGTAGTAATAGTAGTAGTGGTAGTGGTATCAATATGTTCTCGGGCATCCAATACTGGGTAGTGTACCACCCAAGCATCTTGAATTTCTCATGGAACCCACCTCACACCCCTGCCTCCTCCCCACTCTTCCTCACCCTTGCCATCCTCACCTACCTCTCCCTCACTTTCCTCGTTTCCCACCTCCCCCTCCCACCTTTCCCTCCCCGCCTCCTCAGGCCCATCACCGCCCTCCACAACCTGGCCCTCCTCCTCCTCTCCCTCACCATGGCACTGGGCTGCACCCTCACCATGCTCACCCACACCCCACACCTCCGCTGGGCCATATGCATCCCTCCACACACCCAACCCAGTGGGCCCATATTCTTCTGGGCCTACATCTTCTACCTCTCCAAGTTCCTTGAGTTCCTCGACACCCTCTTCATCCTCCTCTCTTCCTCCTCCACCCGGCGCCTCTCCTTCCTCCACGTGTACCACCACTCCACCGTCCCCTTCATGTCCTACCTCTGGCTCCACTCCTCCCAGTCCCTCTTCCCCATCGGCGTCCTCACCAACTCCTCCGTCCACGTCACCATGTACTCCTACTACCTCCTCACCGCCCTCCGCCTCCGTCCCCAGTGGAAGCGCGCCGTCACCGATTGCCAGATCATCCAGTTCCTCTTCGGCTTCGCCCTCTCCGGCCCCATGCTCTATTATCACTTCTTCGGGTCTGCAGCATGCTCCGGGATGTGGGCTTGGTGCTTCAATGGCCTCTTCAATGCTTCTCTTTTGGCCCTTTTCCTTCACTTTCATCTCAAGAGTTATGCCGCCAATGCCAACAAGAAACTCGGCATCTTCTCGGGCATCCAATACTGGCTAGTGTACCACCCAAGGATCGTAAATTTCTCATGGAACCCTCCCCACACACTCGCCTCTTCCCAACTCTTCCTCTCCCTCGCCATCCTCACCTACCTCTCCCTCACTTTCCTCATCTCCCAGTCCCACCTTCCTCTTCCACCTTTCCCTCAGCGCCTCCTCAGGCCCATTACGGCCCTACACAACCTGGGCCTCCTCCTCCTCTCCCTCACCATGGCACTGGGCTGCTCCCTCACCATGCTGGCCCACACCCCCCACCTCNGCTGGGCCATATGCATCCCTCCACACACCCAACCCAATGGGCCCATCTTTTTCTGGGCCTACATCTTCTACCTCTCCAAGCTCCTCGAGTTCCTCGANACCCTCTTCATCCTCCTCTCTTCCTCCTCCACCCGTCGCCTCTCCTTCCTCCACGTGTACCACCACTCCGCCGTCCCCATCTTGTCCTACCTCTGGCTCCACTCCTCCCAGTCCCTTTTCCCCATCGGCGTCCTCACCAACTCCTCCGTCCACGTCACCATGTACNCCTACTACCTCCTCACCGCCCTCCGCCGCCGTCCACCGTGGAAGCGTGCCGTCACCGATTGCCAGATCATCCAGTTCCTCTTCGGCTTCGCCGTCTCCGGCCCCATGCTCTATTATCACTTCTTCGGGTCTGGAGGATGCTCCGGGATGTGGGCATGGTGCTTCAATGTCCTCTTCAATGCTTCTCTTTTGGCCCTTTTCCTTGACTTTCATCTCAAGAGGAAGAAGGCAGAAAGCAGAAGAAGCAGAGGAAGAAGAATGAGTAGTGGTGGTATCCAATACTGGGTAGTGTACCACCCAAGCATCTTGAGTTTCTCATGGAACCCACCCCACACCCCTGCCTCTTCCCCACTCTTCCTCACCCTCGCAATCCTCACCTACCTCTCCCTCACTTTCCTCATTTCCCACCTCCCTCTCCCACCCTTCCCTCCCCGCCTCCTCAGGCCCATCACCGCCCTCCACAACCTGGTCCTCCTCCTTCTCTCCCTCACCATGGCACTGGGCTGCTCCCTCACCATGCTCACCCACACCCCACTCCTCCGCTGGGCCATATGCATCCCTCCACACACCCCACCCACCGGGCCCCTCTTTTTCTGGGCATACATCTTCTACCTCTCCAAGTTCCTTGAGTTCCTCGACACCCTCTTCATCCTCCTCTCCCCCAGCTCCTCTTCCCGGCGCCGACGCCTCTCGTTCCTCCACGTGTACCACCACTCCACCGTCCCTCTCATGTCCTACCTCTGGCTCCACTCCTCCCAGAGTCTCTTCCCCATCGCCCTCCTCACCAACTCCTCTGTCCACGTCACCATGTACTCCTACTACCTCCTCACCGCCCTCGGTCTCCGACCCCCATGGAAGCGCGCCGTCACCGATTGCCAGATCCTACAGTTCCTCTTCAGCTTCGCCGTCTCCGGATTCATGCTCTATTACCACTTCTCCGGGTCTGCAGGATGCTCCGGGATGTGGGCTTGGTGCTTCAATGGCCTCTTCAATGCTTCTCTTTTGGCCCTTTTCCTCGATTTTCATCTCAAGAGTTATGCCAATGCCAACAAGAAACGCACCCATAAACATAGGAAAGAAAAAGATAAAAAAAAGAAAAGAAAAGAACCATATGATGTGTCCCGGATGAAAAGAGAAGAGACTAAGAAGGAGACAATGGCTGGGCTGCGACAGTGCAACAAACGGGATGCACAGTACCAAAACAGAGAAGATCAAGAACTTCTCAATATGGAGGCCAGGCCAAACACCAGGGTCCTCTCCACACTTTGTGTGCTTCACCGTCCTTTCTTACCTCCTCAATCTCATAACCATACTCACTGCATTGCATTCCCGCCCGCGTCCATGCCTCCTGAAACCCATCTCAGCCGTCCATGCATAACGTGTTCCTCCTGGACCTGCTCCTGTCCCTCATCATCATGGCCTTCGGCTTCCGCGGCGTACCATGCACCTCACCTCCACTGGATCATCTGCATCCCTCCGCACACCCAGCCCAATGGGCCCCTCTTCTTTTGGGCCTACATCATCTTCTACCTCTCCAAGGTCCTCGAGTTCGCTCCTCATCATCCTGGGCGGACGGAAACAACTCCATCCAACGCCTCACGTTCCTCCTCCACGTGTACCACCACTCAACGGCTGGCTACAGACCTCGCAGACGCNGTTCCCCGCGGTGCTCGTTACCAATTGCGCCGTTCACGTGCTAATGTACGCCTACTACCCGTCCCTCGTGGAAGAAGCTGGTGA

Protein Sequence

>Glyur000498s00016170.1
MSSSNSSSGSGINMFSGIQYWVVYHPSILNFSWNPPHTPASSPLFLTLAILTYLSLTFLVSHLPLPPFPPRLLRPITALHNLALLLLSLTMALGCTLTMLTHTPHLRWAICIPPHTQPSGPIFFWAYIFYLSKFLEFLDTLFILLSSSSTRRLSFLHVYHHSTVPFMSYLWLHSSQSLFPIGVLTNSSVHVTMYSYYLLTALRLRPQWKRAVTDCQIIQFLFGFALSGPMLYYHFFGSAACSGMWAWCFNGLFNASLLALFLHFHLKSYAANANKKLGIFSGIQYWLVYHPRIVNFSWNPPHTLASSQLFLSLAILTYLSLTFLISQSHLPLPPFPQRLLRPITALHNLGLLLLSLTMALGCSLTMLAHTPHLXWAICIPPHTQPNGPIFFWAYIFYLSKLLEFLXTLFILLSSSSTRRLSFLHVYHHSAVPILSYLWLHSSQSLFPIGVLTNSSVHVTMYXYYLLTALRRRPPWKRAVTDCQIIQFLFGFAVSGPMLYYHFFGSGGCSGMWAWCFNVLFNASLLALFLDFHLKRKKAESRRSRGRRMSSGGIQYWVVYHPSILSFSWNPPHTPASSPLFLTLAILTYLSLTFLISHLPLPPFPPRLLRPITALHNLVLLLLSLTMALGCSLTMLTHTPLLRWAICIPPHTPPTGPLFFWAYIFYLSKFLEFLDTLFILLSPSSSSRRRRLSFLHVYHHSTVPLMSYLWLHSSQSLFPIALLTNSSVHVTMYSYYLLTALGLRPPWKRAVTDCQILQFLFSFAVSGFMLYYHFSGSAGCSGMWAWCFNGLFNASLLALFLDFHLKSYANANKKRTHKHRKEKDKKKKRKEPYDVSRMKREETKKETMAGLRQCNKRDAQYQNREDQELLNMEARPNTRVLSTLCVLHRPFLPPQSHNHTHCIAFPPASMPPETHLSRPCITCSSWTCSCPSSSWPSASAAYHAPHLHWIICIPPHTQPNGPLFFWAYIIFYLSKVLEFAPHHPGRTETTPSNASRSSSTCTTTQRLATDLADAVPRGARYQLRRSRANVRLLPVPRGRSW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	121620	136175	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016170.1	PF01151.13	ELO	40	276	5.20E-51
Glyur000498s00016170.1	PF01151.13	ELO	306	541	2.30E-49
Glyur000498s00016170.1	PF01151.13	ELO	575	814	7.40E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.041
SRR1783600	control	1.938
SRR1783602	moderate drought stress	1.472
SRR1811619	moderate drought stress	1.441

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.499
DRR006520	Root Summer glycyrrhizin high producing strain	0.515
DRR006521	Root Winter glycyrrhizin high producing strain	0.107
DRR006522	Root Winter glycyrrhizin high producing strain	0.139
DRR006523	Root Summer glycyrrhizin low producing strain	0.593
DRR006524	Root Summer glycyrrhizin low producing strain	0.572
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.631
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.462

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.454
SRR2868004	Drought Stress (root)	3.332
SRR2967015	Control (root)	3.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.524
SRR9715740	Leaf	3.168
SRR9715741	Leaf	1.599
SRR9715739	Root	1.725
SRR9715742	Root	0.653
SRR9715743	Root	0.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.270
SRR8749028	MeJA induced 9h	2.715
SRR8749029	MeJA induced 9h	2.093
SRR8749030	Uninduced	0.763
SRR8749031	Uninduced	0.752
SRR8749032	Uninduced	1.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.660
SRR8400027	Control - Root	1.194