Gene detail information of Glyur000498s00016161 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G33270.1 | 3.00E-130 | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein |
| NR | XP_004485514.1 | 0 | PREDICTED: uncharacterized protein LOC101494610 [Cicer arietinum] |
| trEMBL | tr|I1MDQ4|I1MDQ4_SOYBN | 0 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00498 | 87153 | 93904 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000498s00016161.3 | PF01734.17 | Patatin | 149 | 302 | 3.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.104 |
| SRR1783600 | control | 4.919 |
| SRR1783602 | moderate drought stress | 6.620 |
| SRR1811619 | moderate drought stress | 6.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.453 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.230 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.747 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.666 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.295 |
| SRR2868004 | Drought Stress (root) | 5.912 |
| SRR2967015 | Control (root) | 5.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.505 |
| SRR9715740 | Leaf | 21.584 |
| SRR9715741 | Leaf | 11.721 |
| SRR9715739 | Root | 1.249 |
| SRR9715742 | Root | 3.788 |
| SRR9715743 | Root | 3.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.774 |
| SRR8749028 | MeJA induced 9h | 3.047 |
| SRR8749029 | MeJA induced 9h | 1.954 |
| SRR8749030 | Uninduced | 2.140 |
| SRR8749031 | Uninduced | 0.450 |
| SRR8749032 | Uninduced | 0.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.750 |
| SRR8400027 | Control - Root | 14.974 |