Gene detail information of Glyur000498s00016157 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23570.1 | 5.00E-116 | XS domain-containing protein / XS zinc finger domain-containing protein-related |
| NR | XP_004486239.1 | 0 | PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Cicer arietinum] |
| Swissprot | tr|A5YVF1|SGS3_SOLLC | 4.00E-165 | Protein SUPPRESSOR OF GENE SILENCING 3 |
| trEMBL | tr|K7M9N7|K7M9N7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05380.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00498 | 71761 | 76531 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000498s00016157.1 | PF03470.9 | zf-XS | 233 | 260 | 1.10E-05 |
| Glyur000498s00016157.1 | PF03468.9 | XS | 304 | 417 | 1.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.428 |
| SRR1783600 | control | 1.517 |
| SRR1783602 | moderate drought stress | 1.317 |
| SRR1811619 | moderate drought stress | 1.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.521 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.858 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.689 |
| SRR2868004 | Drought Stress (root) | 4.735 |
| SRR2967015 | Control (root) | 3.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.525 |
| SRR9715740 | Leaf | 1.669 |
| SRR9715741 | Leaf | 0.677 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.676 |
| SRR9715743 | Root | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.460 |
| SRR8749028 | MeJA induced 9h | 5.355 |
| SRR8749029 | MeJA induced 9h | 4.510 |
| SRR8749030 | Uninduced | 4.691 |
| SRR8749031 | Uninduced | 3.646 |
| SRR8749032 | Uninduced | 2.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.225 |
| SRR8400027 | Control - Root | 6.495 |