Gene detail

Gene detail information of Glyur000498s00016155

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11400.3	8.00E-47	partner of Y14-MAGO
NR	XP_003593095.1	2.52E-104	Partner of Y14 and mago A [Medicago truncatula]
trEMBL	tr\|A2Q490\|A2Q490_MEDTR	9.00E-105	Partner of Y14-mago protein, putative {ECO:0000313\|EMBL:AES63346.1}

Sequence

Transcript Sequence

>Glyur000498s00016155.1
CACAGTTACACAATTTTTATGATCAAATTATAATTGAGTTCGCTTTATCTTGTTGTAAACAAACATATCCTTTCGTAAAATCAATCAAATATATTAAAGGTGTGCGCGTAAGGCAGCGTGTAATTAACATTTTTTTTTTGGCAAATTAAAATTGAAGAACTGTTGGAAATTTGAGTAGTGAGAGGAAGAAGGGGAACCCAAATAGGGGCAGAGAGAGAAAGAGTGAGTGAGTGAGTGAGAGTGAGAGTGAGAGTGAAGGAGTGATGTCGACTAGTAACAGAAGCGAAGATCATCAGAAGCAGGAAGTAGCAGAGCTGGGCAAAACCCTAAAAGAAGGTGAACGGATCCTCGCCCCGACCCGGCGACCCGATGGTACCCTCCGAAAGCCTATTCGCATCAGAGCCGGCTATGTCCCTCAAGAAGAAGTCGCTATCTATCACCCCAAACCTGCCCTCTTGAGAAAGGAGGTGGGCTCACAGAATGGTCCTCCAGGTTATGACCCTGAATTGGATTCAAAACCAAAAACCAAATCGGTTAAGAGGAATGAAAGAAAGAAGGAAAAACGGCTTCAGCAGGCTCAACATGAAAAGGATAAGAGCTTAGAACCAACTGTAGCTGAAGATAGTAGTAAGCCNGAAGCAGTAATCGTCGAGAATTCTGTCCATTCATTAACCTCTCAGATGAATGAACTGGGTGTTTCTGGAGATTCCTCCATTGTTACTCCTACTGCCAACTCCGTTGAAGTTTCTGAGCCAATTGGCTCNGGTCAAGATTTAGACAAAAGAATTCGAGCACTGAGAAAGAAGATTCGACTTACGGAAGCCCTACAGCAGAAAACTACAGAGCAAGATTTAAAGCCAGAGCAGTTAGAGAAGTTAGCAAAACTGGAAGAATGGCGTAAGGAGCTGAAACAATTGGAGGATGAAAAAGCCAAAACACCGGCAGAGTGAATAAAGTATTATAATTTAGCATATGAATCTGTAGTTCTTGATGCTTTCTTGATAAGATACGGGCTCCAAACCAGTTAATCTATCAAGGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	61900	64674	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016155.1	PF09282.5	Mago-bind	25	51	2.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.881
SRR1783600	control	19.839
SRR1783602	moderate drought stress	18.910
SRR1811619	moderate drought stress	17.640

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.732
DRR006520	Root Summer glycyrrhizin high producing strain	26.634
DRR006521	Root Winter glycyrrhizin high producing strain	5.581
DRR006522	Root Winter glycyrrhizin high producing strain	5.449
DRR006523	Root Summer glycyrrhizin low producing strain	21.580
DRR006524	Root Summer glycyrrhizin low producing strain	21.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.297
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.423

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.710
SRR2868004	Drought Stress (root)	15.722
SRR2967015	Control (root)	17.415

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.515
SRR9715740	Leaf	11.321
SRR9715741	Leaf	10.119
SRR9715739	Root	3.439
SRR9715742	Root	9.431
SRR9715743	Root	9.819

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.199
SRR8749028	MeJA induced 9h	10.175
SRR8749029	MeJA induced 9h	9.442
SRR8749030	Uninduced	6.261
SRR8749031	Uninduced	1.377
SRR8749032	Uninduced	0.912

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.672
SRR8400027	Control - Root	19.705