Gene detail

Gene detail information of Glyur000498s00016154

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25260.1	2.00E-97	Ribosomal protein L10 family protein
NR	XP_004485517.1	4.79E-157	PREDICTED: mRNA turnover protein 4 homolog [Cicer arietinum]
trEMBL	tr\|I3S103\|I3S103_LOTJA	5.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:AFK33945.1}

Sequence

Transcript Sequence

>Glyur000498s00016154.1
GGAGAATGGGTATGAAGAGAGCCCATTTACGAGCCCAACCAGAATTATCTATTTCTTTATTATACGTTGCAATTTGCAAAACCCTACTCACACAAGTTGCCACTGCAAGCAAAGGGGAACTCAACTCTTCACGTCGACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGAAGCATCCTCAAAACTTCAAAATGCCAAAGTCGAAGCGAAACCGACAAGTTACACTCTCGAAGACAAAGAAAAAGGGAAGGGATCATAAAGAGGTGATAGTGAACTCAATAAGAGAGGCAGCAGAAAAGTACAGTTCGGTGTACGTGTTTTCTTTCGAGAACATGAGGAATCAGAAATTCAAGGAGTTTAGGGAGCAGCTAAAATCAAGTAGCAGATTCTTTCTCGGCTCCAACAAAGTAATGCAAGTCGCTCTGGGTCGCTCTGCTTCTGATGAGATCCAACCTGGCCTTTACAAGGTTTCAAAGCTACTGCGTGGAGATGCTGGGATGGTTTTTACCAATTTGCCTAAAGAAGAAATTGAAAGGCTGTTCAATGCATTTGAGGAATATGACTTTGCAAGAACTGGAGGGATTGCCACGGAAAAGGTGGATCTCAAAGAGGGTCCTTTAGAACAGTTCACACATGAGATGGAACCTTTTCTGCGGAAGCAAGGCATGCCTGTTCGGTTGAATAAAGGAGTTGTGGAGCTTGTTTCCGATTTTGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCCGAGGCATCTCGCATACTGCGTTTGATGGGGATCAAGATGGCTACATTTCGACTTAACCTGATCTGCAGGTGGAGTCCTGATGATTTCGAAGTTTACATTGATGGGCCTGGTGATTCAGATGTTGAATGCTCATAGTACCTGTTTTTAAACATTTAAGATTACAAGATATGTTGCGGATGTGATTTGCATTGGAGGCTACCTTTGTATACTCATACAGTGCTACAGCATTGGCGTTTTTGAGATAATGTATTTTTAGGAGAGTTGATGAACGTTAGATTTCTGTGGACTTAGCCAAGTGGTTAACAGGGAAGTGGCATGTAGCCATCGTCTGTAACGTATCAAAAATTCAAATTGTGAACTAGACAAATTTTTGCCTACTGATATTCAATGTCATATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	59021	61666	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042254 ribosome biogenesis

cellular_component
GO:0005622 intracellular

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016154.1	PF00466.15	Ribosomal_L10	19	121	6.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.963
SRR1783600	control	11.028
SRR1783602	moderate drought stress	9.578
SRR1811619	moderate drought stress	9.764

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.544
DRR006520	Root Summer glycyrrhizin high producing strain	42.638
DRR006521	Root Winter glycyrrhizin high producing strain	31.309
DRR006522	Root Winter glycyrrhizin high producing strain	29.816
DRR006523	Root Summer glycyrrhizin low producing strain	25.686
DRR006524	Root Summer glycyrrhizin low producing strain	25.234
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.605
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.239
SRR2868004	Drought Stress (root)	59.778
SRR2967015	Control (root)	46.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.635
SRR9715740	Leaf	47.167
SRR9715741	Leaf	31.448
SRR9715739	Root	7.159
SRR9715742	Root	26.509
SRR9715743	Root	24.457

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	99.805
SRR8749028	MeJA induced 9h	61.366
SRR8749029	MeJA induced 9h	50.987
SRR8749030	Uninduced	9.110
SRR8749031	Uninduced	5.254
SRR8749032	Uninduced	4.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.508
SRR8400027	Control - Root	48.702