Gene detail information of Glyur000498s00016151 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54630.1 | 6.00E-134 | |
| NR | XP_004485518.1 | 0 | PREDICTED: kinetochore protein NDC80 homolog [Cicer arietinum] |
| trEMBL | tr|G7IFT2|G7IFT2_MEDTR | 0 | Kinetochore NDC80-like protein {ECO:0000313|EMBL:AES64683.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00498 | 28371 | 32657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000498s00016151.1 | PF03801.8 | Ndc80_HEC | 27 | 160 | 1.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.983 |
| SRR1783600 | control | 8.043 |
| SRR1783602 | moderate drought stress | 4.850 |
| SRR1811619 | moderate drought stress | 4.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.829 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.736 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.580 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.388 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.321 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.947 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.871 |
| SRR2868004 | Drought Stress (root) | 7.375 |
| SRR2967015 | Control (root) | 9.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.572 |
| SRR9715740 | Leaf | 0.496 |
| SRR9715741 | Leaf | 0.473 |
| SRR9715739 | Root | 2.860 |
| SRR9715742 | Root | 3.445 |
| SRR9715743 | Root | 2.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.496 |
| SRR8749028 | MeJA induced 9h | 13.037 |
| SRR8749029 | MeJA induced 9h | 10.304 |
| SRR8749030 | Uninduced | 2.514 |
| SRR8749031 | Uninduced | 1.421 |
| SRR8749032 | Uninduced | 1.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.159 |
| SRR8400027 | Control - Root | 12.865 |