Gene detail

Gene detail information of Glyur000498s00016150.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08500.1	1.00E-102	MAPK/ERK kinase kinase 1
NR	XP_006597333.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase 1-like isoform X1 [Glycine max]
COG	YP_004271969.1	8.00E-28	serine/threonine protein kinase [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q39008\|M3K1_ARATH	7.00E-141	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|I1MDR4\|I1MDR4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05400.1}

Sequence

Transcript Sequence

>Glyur000498s00016150.1
AGCGCGTTCACCAGTTTTGAGTTATCTTGAATTCCGCGCCTATTGCCACGTGGGCTGACGAGGTTTCTGCACACCTTTGGTAACATAAAAATAAAAAATAAAAAAAAACAATGATTTGTTTGGTAGCTAAAATAAAAGAAAAAAGAAAAAGAAATTATAGTACTAGGAATGTAGACAGACTGGTGNTGTGGTTGCGGTGCCGTTGTGGCCGTCTCTGTCTGTCTGTCTGTATCTGAATATTGATATTTGAATATTGAATACTGAATACGATACGATACACNAACACACGGGAGAGGGAAGGGAAGTGAAGAATGGAGGGTGGTGGTGGTGGTGTGGGTGATCAGCGGAAGCAGCAGCGTTTGAAATTGAAGCCACGGCTTGAGCGGCGCAACGCCATGAAGAACATCGATTACCATTACCAACTGGACCACAACGACAACGACTTGTATTCCCCAAATTCCTTGTTGTTGCAGAACGAGACAAGCCTGCGCGTGAAGGGAATCGATGGGGAATTCGAGCACATATTCCGAAGCCTCGGCCTCTCTGGACCCGAAGACTTTGCCATCCCAACCGCAGCTTGGGAACAATCCCAAAGGCAAAAGTCTCTTTCTTCTGCTTCTCCTCGTAATAATTCCAACAACAACAACAACACCCAAATTGAAAGTACTCATCGTGTTCGTGACAATCATCAGAGTAGAGATGTTGTTGGGGGAATAAAGGGTGTTAGGCCTCCCTTTCTGGCACCCCCGCCGGCGATGTTGCCGCCGTCACAGTCACTTGTTGTTGACCATGTTACCTCTACTTGGGATTTGATCAGCTCCTTCGCTCCCCATCATCATGATGTTGATGCTGCAGATTCACCTTTCCATAGGGGTAGGGGAATTGAAAGGGAAAGGGAAAGGGAAAGGGATGTGCTTTCTGATTCTGATGATGAGAGTACTGTGGAGGAGGACGTTGGTGGTGGTGAAATTGAAATTGGAATTGCTTCTTCTATGGTTGACGATTATTCCATTCATAATGTCTCCCCAAATGGGTCCTTTACAATTACGCGGACTTTNTGCTCTTGGCAAAAGGGCGAGATTTTAGGAAAGGGGTCCTTTGGAACCGTCTACGAGGGCTTCACTGACGATGGGATCTTTTTTGCGGTAAAAGAAGTGTCTTTGGTGGATGATGGAAGCCAGGGCAAACAGAGCATTTCCCAACTTCAGCAGGAAATATCTCTTTTGAGTCAGTTTGAACACGAGAACATAGTTCGATATCTTGGCACAGATAAGGACGATGATAAGCTGTATATCTTCCTTGAGCTTGTAACAAAAGGATCTTTGGCAAGTCTCTATCAAAAGTATCGTTTAAGGGACTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGATATCAAGTGTGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACCAAACTGAACGATGTCAAATCAAGCAAAGGCTCCCCATATTGGATGGCCCCTGAGGTTGTTAACTTGAGGAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTAGAGATGTTGACACGGCAACCCCCTTACTCTCATTTGGAAGGAATGCAAGCGTTATTTCGGATTGGCAGGGGTCAACCTCCACCAGTTCCGGAATCTTTATCAAAAGATGCCCGGGATTTCATTCTTAAATGCTTACAAGTTAACCCAAATAAACGGCCAACTGCTGCTCAGCTATTGGATCATCCATTTGTAAAGAGACCACTTCTATCTCCCATAAGTCCTGTTTCTCCAAGCATTAATCTTTTACTGTCTTAAGAGCTTTCAATCACCTCCGACATTGCCACGGGGAAGATCAAATTCATCCTCTATTTTTGACCCTTTATCCTAGTGAAGTGATCTAGTTCTCGGGTCAAAACTGGTGGAATGTATAGACTGGTTTGCAGTTCGACCTAACATTAACAATCTAAATCTGGTTTGGTTATAATCACATTAGCCCACCAAGCTGGTCCCTGGTGAAGGAGTACCTTTTTTTATCTCAAAAAAAGGTAATTTTACTATGTGAAGTGGAGAAGGGTGCTGGTAAATACACTCCCAAATTTGGCCATCCACCCCACTTTAAAAATTGTTACTTGAAATCTCAAAATTATCCCTTCTTAATATCACGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	22152	26200	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13414	MEKK1	EC:2.7.11.25	MAPK signaling pathway - plant	map04016
			Plant-pathogen interaction	map04626

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016150.1	PF00069.20	Pkinase	252	505	5.00E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.802
SRR1783600	control	3.837
SRR1783602	moderate drought stress	5.073
SRR1811619	moderate drought stress	5.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.210
DRR006520	Root Summer glycyrrhizin high producing strain	7.352
DRR006521	Root Winter glycyrrhizin high producing strain	11.756
DRR006522	Root Winter glycyrrhizin high producing strain	11.246
DRR006523	Root Summer glycyrrhizin low producing strain	13.244
DRR006524	Root Summer glycyrrhizin low producing strain	13.406
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.807
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.626

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.852
SRR2868004	Drought Stress (root)	9.747
SRR2967015	Control (root)	8.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.702
SRR9715740	Leaf	8.801
SRR9715741	Leaf	13.186
SRR9715739	Root	4.212
SRR9715742	Root	8.940
SRR9715743	Root	7.470

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.637
SRR8749028	MeJA induced 9h	15.693
SRR8749029	MeJA induced 9h	3.734
SRR8749030	Uninduced	13.908
SRR8749031	Uninduced	13.052
SRR8749032	Uninduced	4.956

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.186
SRR8400027	Control - Root	5.594