Gene detail

Gene detail information of Glyur000498s00016149

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68150.1	3.00E-44	WRKY DNA-binding protein 9
NR	KHN39172.1	2.16E-146	Putative WRKY transcription factor 9 [Glycine soja]
Swissprot	tr\|Q9C9F0\|WRKY9_ARATH	2.00E-66	Probable WRKY transcription factor 9
trEMBL	tr\|V7CNT4\|V7CNT4_PHAVU	1.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESW31023.1}

Sequence

Transcript Sequence

>Glyur000498s00016149.1
GATACCGATACCACAGCTGGCGAAATTGAAGATGATGCACCAGTGGGTGAAATTTCATTGCAAGATGAGAACAACAATGCTAGAGAGATTTTGTTATTAACGGGTATGATTTACAAGCAGATGAATATTTTACAAGTGGAGATGGATCGCGTGAAAGAGGAAAACAAAGTTATGATGAAAATGATGGAGCAAACATTGAAAGACTACTATGATCTGCAAATGAAATTTGCAGCAACCATTCAAGAGAACAATAAAAAAATAGATCATCATATTTCTCTCTCACTTCAAGACAACACAAACAGTAGCAGTGAAGGACCACCTATGATTCCTGAGATCTTCGATAACAATACTCAAGCATCTCCATCTCCAAGAAAAACTGACGATCATATTCTTACCGAGAGTGAATTGAGTTTATCACTNAGGTTGCAAACAACCACAACAAGTCATGATGATGAGAAATTAGACAATAAGGAAGAACTTTCGAGTTTTGCAATATCAGAGCAGAACAAGAAGTTACGGCGGACTCATCATGACTTGTCTGGTATGAGTAGTACCATGCATAATGCTGCCACCTCCCCTCCAAATAGAAAGACTAGGATTTCAGTTAGAGCANGATGTGAGCAAGCCAAAATGAATGATGGATGCCAATGGAGAAAATATGGCCAAAAAATTTCAAAAGGAAATCCCTGCCCACGAGCCTACTATCGTTGTACCGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTGCAAAGATGCCAAGATGACAGGTCCATACTAATCACTACCTATGAAGGAACACATAACCATCCACTCCCTGTGGGTTCAACTGCTATGGCTTCTTCAGCTGCTAATTCCTCTGTGTTGCTAGATTCAGGCAATCCTATTGCAAAATATGGCACATCTAGTTTCACCCAACCATCCATTAATCCTTACAACACCTTCCACCCTTTAAATCCATCTTTTAATATTGTAAGAAGCAATATAAGCCCCAGTTGTGACCCCTCCAAAGGGATTAATGTTCTTGATGATCTTACTAATAATAATAATAATAATAATAATCTCAATGGTTCATCACTCCGTTTTCATGCTGCTAGCTCCTCCAATGTGACAGCAGCAAAACAACGTTTTCCTTGGCCGGTGCAAAACAAACACCAGAGTAGCGGTAATGCTATTGCAATGAACAACTTTCACANCCTTATGAATGAGAGGGTTCGGAAAGCAGAAGAACCAGCAAAGCCTCTAGCTGATAATATTAATGCGTCTGCAATTGCCAATGATCCTAAGTTCAGGTATGCAGTTGCAGCGGCCATCACATCACTCTTCAATAAAGAAGGCCACGTTAATTAATTACTAGCTCATCCTAGCTATATGCAGAGATATCTTTTAATTGGTGCAAAGAGGGTAGGTAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00498	18484	20759	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY
EAR motif-containing Proteins	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000498s00016149.1	PF03106.10	WRKY	211	270	1.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.051
SRR1783600	control	0.052
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.078
DRR006522	Root Winter glycyrrhizin high producing strain	0.076
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.413
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.008
SRR2868004	Drought Stress (root)	1.812
SRR2967015	Control (root)	1.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.694
SRR9715740	Leaf	1.099
SRR9715741	Leaf	3.401
SRR9715739	Root	0.000
SRR9715742	Root	0.109
SRR9715743	Root	0.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.135
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.113
SRR8749031	Uninduced	0.934
SRR8749032	Uninduced	0.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.431
SRR8400027	Control - Root	0.396