Gene detail

Gene detail information of Glyur000497s00020196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62890.3	0	Xanthine/uracil permease family protein
NR	XP_003549636.1	0	PREDICTED: nucleobase-ascorbate transporter 6-like isoform X1 [Glycine max]
COG	YP_003736672.1	9.00E-72	xanthine/uracil permease family protein [Halalkalicoccus jeotgali B3]
Swissprot	tr\|Q27GI3\|NAT6_ARATH	0	Nucleobase-ascorbate transporter 6
trEMBL	tr\|I1MTK1\|I1MTK1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G10000.4}

Sequence

Transcript Sequence

>Glyur000497s00020196.1
CAAGATTTTAAAGTGGAGGAGTGATGCATTTTTTCCTATTATAATAACTACGTATTGTAGAGAGAAAAAGGAAAGGAGTCTAGTTCGTGGGGTAGAAAGAGAGNGTGAAGGAGGAGAGAGAAAGTTCAGTTCATTCTGTGTACGCCTTTTTATCGTTTCTGAATCTTTCTTTCAATACTTTACTACTCCACTCTCTGCACTCCCCCATAAACAGCACCGTCCGAGTTTTCTTCCACTCTTCTCTTAACTCAAAAACAAAACCACTTTTTTTTCAATATTTATTTAATATTTTTTTTATTTCGTGCGGCACTTGGGTTTTTGACTTTNCAGTCCCCTTGATTTTGCTAGCTGAAACATCGTTAAAAAGGTATACTCTTTTTTCATCTTCTGTTTTCTTTGCGCAATTATTGTGACTATTTACTTTCCGAAACCAAAAGGGAACTCTCTAGTAGTCACAGGACTCACAGTTACACTGTCATTTTCTGCTCTTATTGGCCGAACTTCATTTCCCTTTTATGTTCTTCTCTGTTTAGTTGCTAGTCATTTCAGATAGCTGGGAGTGTATCAGATTTAGGAAGAAAAGCAAAGGAAAAAAAAAAGTGATGGCAGGAGGTGGTGGAGGAGCTCCAGCGCCTAAAGCAGATGAGCCACAGCCACATCCACCAAAGGATCAGCTACCCAACGTTTCTTACTGCATTACAAGCCCTCCTCCATGGCCCGAGGCCATACTTCTTGGTTTTCAACATTATCTTGTCATGCTGGGTACAACTGTACTAATTCCCACAGCTCTTGTTCCACAGATGGGAGGTGGCCATGAGGAGAAGGCACAAGTTATCCAAACACTACTCTTTGTGGCTGGAATTAACACATTGCTGCAAACTGTGTTCGGAACCCGATTGCCTGCAGTGATTGGAGGGTCTTATACCTTTGTTCCGACAACAATCTCGATTATTCTTGCTGGTCGATTCAGTGATGAGCCAGATCCTATAGAGAAATTCAAGAAGATAATGCGGGCAATCCAAGGTGCTCTTATTATTGCTTCAACCCTACAAATAGTACTAGGGTTTAGCGGTCTTTGGCGTAATGTTGCAAGGTTCTTAAGTCCACTTTCAGCAGTTCCCTTGGTATCTCTTGTTGGTTTTGGGCTGTATGAGTTGGGCTTTCCTGGGGTTGCTAAATGTATAGAGATTGGACTGCCAGAGCTTATACTGCTAGTATTTGTTTCACAGTTTGTACCCCATGTGCTCCATGCAGGAAAACACATCTTCGACAGATTTGCTGTTTTAGTTACAGTTGCAATTGTGTGGTTATATGCATATATTCTCACTGTTGGAGGGGCCTATAACCATGCTGCACCTAAAACACAGTTATCCTGCCGCACTGATCGTGCTGGCCTAATAGATGCTGCTCCATGGATACGAGTTCCATATCCATTTCAATGGGGAGCACCTTCATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTAGTAGAGTCCAGTGGAGCTTTTATTGCTGTTTATCGGTTTGCAAGTGCAACACCATTACCACCATCTATTCTTAGTCGGGGTATTGGTTGGCAGGGTGTTGGCATTCTGTTATCAGGGTTGTTTGGAACTGTCAATGGATCCTCTGTATCTGTAGAAAATGCTGGTCTTTTGGCTTTGACACGTGTTGGAAGTCGAAGAGTGGTGCAAATATCTGCCGGNTTCATGATTTTCTTTTCAATTCTAGGGAAATTTGGAGCAGTTTTCGCTTCCATTCCACCTTCCATTGTTGCTGCACTGTACTGCTTGTTCTTTGCTTATGTTGGTGCGGGAGGTCTAAGNTTCCTTCAATTCTGCAACCTCAATAGTTTTAGGACAAAGTTCGTATTAGGCTTCTCTATCTTCCTGGGCTTGTCTGTGGCACAGTACTTCAATGAGTACATAACAGTTAATGGTTTTGGTCCAGTTCATACCGGAGCAAGATGGTTCAATGATATAGTCAATGTTCCATTCCAATCAAAAGCTTTTGTTGCGGGAGTTGTGGCATATTTCCTGGATAACACACTACATAAGAAGGAAGCTGCTATTCGGAAAGATAGAGGGAAACATTGGTGGGACAAGTACCGGTCCTTTAAGACTGACTCAAGAAGTGAGGAGTTCTATTCACTGCCTTTCAATCTAAACAAGTACTTCCCATCTGTGTAACTTATTAGGTGGTTTCATCAAAATATTGTTTCACCAAGTGTCTCTAAAAGGTCATAGTTTGATCTTTTTTAATATGAAATTGGATTTTGTTATAGGCTATAGTTATATGAAGTCCTCTCTTGCTATAGAATATTCTGTAAAACATTTGTTTTATTTTCCTTCTGTAAATGCTGACCTGGGAAGTGGATTCACGGTATTAGTGCATGCTTTGTTTATTATTCATTTGACATATATCCTGTTTCACCTTATCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00497	102109	108589	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000497s00020196.1	PF00860.15	Xan_ur_permease	40	444	8.20E-68
Glyur000497s00020196.2	PF00860.15	Xan_ur_permease	40	444	8.20E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.403
SRR1783600	control	31.378
SRR1783602	moderate drought stress	24.010
SRR1811619	moderate drought stress	23.733

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.980
DRR006520	Root Summer glycyrrhizin high producing strain	40.292
DRR006521	Root Winter glycyrrhizin high producing strain	44.357
DRR006522	Root Winter glycyrrhizin high producing strain	42.692
DRR006523	Root Summer glycyrrhizin low producing strain	49.093
DRR006524	Root Summer glycyrrhizin low producing strain	48.706
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.310
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.614

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.074
SRR2868004	Drought Stress (root)	98.560
SRR2967015	Control (root)	107.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.388
SRR9715740	Leaf	26.929
SRR9715741	Leaf	36.312
SRR9715739	Root	77.337
SRR9715742	Root	74.618
SRR9715743	Root	70.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.996
SRR8749028	MeJA induced 9h	61.888
SRR8749029	MeJA induced 9h	49.209
SRR8749030	Uninduced	27.225
SRR8749031	Uninduced	11.964
SRR8749032	Uninduced	17.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	133.224
SRR8400027	Control - Root	124.084