Gene detail information of Glyur000497s00020184


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G24450.12.00E-38Ribonuclease III family protein
NRAFK47329.13.74E-96unknown [Lotus japonicus]
COGYP_004130173.17.00E-13ribonuclease III [Taylorella equigenitalis MCE9]
trEMBLtr|I3T487|I3T487_LOTJA1.00E-96Uncharacterized protein {ECO:0000313|EMBL:AFK47329.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold004973669837768+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006396  RNA processing

GO:0016075  rRNA catabolic process


molecular_function

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000497s00020184.1PF14622.1Ribonucleas_3_3511592.80E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control202.557
SRR1783600control204.157
SRR1783602moderate drought stress231.382
SRR1811619moderate drought stress230.446

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain292.574
DRR006520Root Summer glycyrrhizin high producing strain288.937
DRR006521Root Winter glycyrrhizin high producing strain100.427
DRR006522Root Winter glycyrrhizin high producing strain95.824
DRR006523Root Summer glycyrrhizin low producing strain276.202
DRR006524Root Summer glycyrrhizin low producing strain277.820
DRR006525Leaf Summer glycyrrhizin high producing strain47.621
DRR006526Leaf Summer glycyrrhizin high producing strain48.191

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)81.870
SRR2868004Drought Stress (root)94.612
SRR2967015Control (root)125.348

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf39.312
SRR9715740Leaf26.004
SRR9715741Leaf34.144
SRR9715739Root289.942
SRR9715742Root185.623
SRR9715743Root206.073

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.087
SRR8749028MeJA induced 9h21.161
SRR8749029MeJA induced 9h26.657
SRR8749030Uninduced11.118
SRR8749031Uninduced3.056
SRR8749032Uninduced9.703

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root175.667
SRR8400027Control - Root209.696

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved