Gene detail information of Glyur000497s00020180 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_009600825.1 | 6.71E-15 | PREDICTED: probable 26S proteasome complex subunit sem1-1 [Nicotiana tomentosiformis] |
| Swissprot | tr|Q9XIR8|SEM11_ARATH | 4.00E-10 | Probable 26S proteasome complex subunit sem1-1 |
| trEMBL | tr|M5WYW6|M5WYW6_PRUPE | 3.00E-15 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12000.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00497 | 13706 | 15162 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000497s00020180.1 | PF05160.8 | DSS1_SEM1 | 7 | 66 | 5.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.972 |
| SRR1783600 | control | 28.164 |
| SRR1783602 | moderate drought stress | 17.406 |
| SRR1811619 | moderate drought stress | 17.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.347 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.488 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.757 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.829 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.801 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.919 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.088 |
| SRR2868004 | Drought Stress (root) | 43.794 |
| SRR2967015 | Control (root) | 39.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.176 |
| SRR9715740 | Leaf | 29.996 |
| SRR9715741 | Leaf | 35.398 |
| SRR9715739 | Root | 25.735 |
| SRR9715742 | Root | 22.986 |
| SRR9715743 | Root | 23.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.977 |
| SRR8749028 | MeJA induced 9h | 35.834 |
| SRR8749029 | MeJA induced 9h | 55.503 |
| SRR8749030 | Uninduced | 28.842 |
| SRR8749031 | Uninduced | 23.079 |
| SRR8749032 | Uninduced | 28.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 67.525 |
| SRR8400027 | Control - Root | 69.709 |