Gene detail

Gene detail information of Glyur000496s00030952

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28910.1	1.00E-78	myb domain protein 30
NR	XP_003534453.1	7.40E-146	PREDICTED: myb-related protein 306 [Glycine max]
Swissprot	tr\|P81392\|MYB06_ANTMA	8.00E-112	Myb-related protein 306
trEMBL	tr\|I1L5Y3\|I1L5Y3_SOYBN	3.00E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G37340.1}

Sequence

Transcript Sequence

>Glyur000496s00030952.1
CTGACTTTGGCCGTCTCATTAGTTCCTCAACAATAGAATAGAATAGAATAGAAGAAGAGAGGAAGAGTTATTAATGCATTTTGCTGTCAACTTTTGACTATTTGCCTTCACTCTCTCTTTCTTTCTTCCCCTATTTATACACCCTTCCCTTTTGACTCTTGCCTTAACACACACCTAATAGCAAAGTAAGAGAGGAAAAAGTGAAGAAAGAAAGAAAGGAATAGAGAGATCTCTGAGAGAAGAAGAGAGATATTTCTGAAGCATATATACATAAAAGTGTTGAATTTTGAAGAGAGGAAAGAAAAGGGTAGTACAAGCTAGGGAAGAAAAAAAGATCATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTCTCTTATATACAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCACCAATACTGGGTTGGCAAGGTGTAGTAAAAGTTGCAGACTTAGATGGACAAATTACTTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGATCAAGAGGAGAAAATGATAATCCATCTTCAAGCTCTTTTAGGGAACAGATGGGCTGCTATAGCTGCATACCTTCCACAGAGAACAGATAATGACATAAAGAACTATTGGAACACATATTTGAAGAAGAAGCTAAAGAAAATGGAAACAGGTGGTACTAATTCTGAAGGACATCATCATGGTTTGTCATCAGTTTCAATGTCTAGAGGTCAATGGGAAAGGAGGCTCCAAACTGACATAGACATGGCCAAAAAAGCACTTAGTGAAGCTCTCTCACCAGACAAAAAGACTAGTAGTTCTACTTTATTACTTGATCAATCAAATTCAAACCTTTCTAGTACTAAACCAACAACAACACAGTCTAATTTGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGCTTAAAGGGTGGATGAAGAACACACCAAAGGCCTCNCCCTCAAGTGCTACTAACTCATCTCTGACTCAGAATTCCTTCAACAANAAGAAGAAAAACAACAACTTGGCTTATAATTGTGGAGGGAATAATAATGACACTGCTTGTTCTAGTGAGGGAGCAAAGGGAGGTGGAAGCAATAGTGTTGAATTGTCTGAGACATTTGAGTCCTTGTTTGGTAATTATAATAATGAGTCATTGGATTATTCTTCAAATAATAATTCTGATCAGTTTTCACAATCTCTGTCCCCTGAAGAAGCTACTACTCTTTTCCAAGATGAGAGCAAGCCAGACAGTACTACTCATTTATCTTTGCTTGAGAAATGGCTACTTGATGATCATGCTGGTTGTCAATTTCAAGAGAAAGTTATAAGCAGCAGCAGCAGTGAAATCACAGCTTCTGAAATTGCCACAATATTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00496	80856	82612	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000496s00030952.1	PF00249.26	Myb_DNA-binding	14	61	2.50E-15
Glyur000496s00030952.1	PF00249.26	Myb_DNA-binding	67	112	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.242
SRR1783600	control	0.239
SRR1783602	moderate drought stress	0.107
SRR1811619	moderate drought stress	0.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.187
SRR2868004	Drought Stress (root)	0.944
SRR2967015	Control (root)	0.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.139
SRR9715740	Leaf	6.147
SRR9715741	Leaf	7.441
SRR9715739	Root	0.000
SRR9715742	Root	0.443
SRR9715743	Root	0.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.329
SRR8749028	MeJA induced 9h	0.810
SRR8749029	MeJA induced 9h	0.509
SRR8749030	Uninduced	1.297
SRR8749031	Uninduced	0.227
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.124
SRR8400027	Control - Root	1.873