Gene detail

Gene detail information of Glyur000496s00030950

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39830.2	8.00E-141	Trypsin family protein with PDZ domain
NR	AFK34777.1	0	unknown [Lotus japonicus]
COG	NP_867289.1	7.00E-54	protease Do-like (S2 serine-type protease) [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9LU10\|DEGP8_ARATH	4.00E-174	Protease Do-like 8, chloroplastic (Precursor)
trEMBL	tr\|I3S3D5\|I3S3D5_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK34777.1}

Sequence

Transcript Sequence

>Glyur000496s00030950.1
CTCTCTCTTTCTCTCCACCCCCTCAAATTTAACTTTCAAAGTTTGCAAATTTTCACTCTAATTTGCATATTCAAACCNTTTTTTTTATTCATTTTGGGGAGAAAATGCAAGTGTCAGCATGCAGTTTGAGGTCTCTGGGAGTGCCTCTACCAAACCAAAGAAGCAGTGTTCTCAGTCGCCGTGAGATTTGCTTTGATGGCATTTCCTCTGTCTGCTCCTCCCACTCCCAACAACAACACATGCCAAACGACGCCGTTCCTCCCCAACCCACCTCCATTTCAAGGTGTAGGACTGTTCAAGATCATCAAACTCAGGATTTTGGTGCAATGCTGGGGGAAATTGTTCTCTCCCCAACACGGCGTGTGTTAATGGCAAGTTTGACTATGTATTCCTGTTTCTGTTCTTCAAGGTACTTCTCAGGAGACTCATCAGTGACACTTGAAGAAGTGACCCCTCCAGTGTTTTCTTCCGGGCCACTCTTTCCCGCAGAGGACCGAATCGTCCAATTATTTGAAAGGAACACATACTCTGTCGTTAACATCTTTGATGTAACATTGCGTCCTCAACTTAATGTGACCGGTGTGGTTGAGATTCCTGAAGGAAATGGCTCTGGGGTAGTTTGGGATGAGGAGGGCCACATTGTGACAAATTATCATGTAATTGGCAATGCCCTTTCAAGAAACCCAAGCTCTGGTCAGGTTGTTGCACGCGTTAATATTCTAGCATCAGATGGAGTACAAAAGAATTTTGAAGGTACACTCATTGGAGCTGACCGATTAAAGGATCTAGCTGTAGATGCTCCTAAAGATATTTTAAGGTCTATCAAGGTGGGGCAGTCATCATCTCTAAAAGTGGGGCAGCAATGTTTGGCAATTGGAAATCCATTTGGCTTTGATCACACCCTCACAGTTGGGGTCATTAGTGGACTTAACCGAGACATCTTTAGCAAAACNGGTGTAACAATTGGTGGTGGTATTCAAACCGATGCAGCCATAAATCCTGGGAACAGAGCTGGTTTGAATGTGGATATTGCTCCAGACTTGACTGCGAATCAACTGAACGTTCGAAATGGAGCTCTTATTCTTCAGGTTCCTGCAAATAGTCTTGCTGCCAAAGCTGGGCTAATTCCCACTACAAGGGGCTTTGCTGGTAATATAGTCCTTGGAGATATCATTATTGCAGTTGACAATAAGCCTGTCAAGAGCAAAGGAGAGTTGTTGAAAGCATTGGATGAATATAATGTAGGAGATAAAGTAATGTTGCTGATTCAGAGGGGTGGTGAAAAGTTGGAGCTGCCTGTGGTACTTGAGGAACAAAGATCTTAAGATTTCTATATCTGCTTTGAGATATCATAACCCAGTAGTGCTTTATTTGGCAGAAATGAATTTGTGCAGTAAACAAAAAGAAAACAAAAGAATTTTGTGCATGAGGGTCTTATGTAGGGAAAGGGAAAAATGTGTTTTTACATAATTTGCCGATTTTTTTCAAAATACTTTATATTTTTGCTCTTACATTATCGGTTATAGAAAAATGTTATATATATGCTGAACTAATTGACAGTCCTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00496	58443	64347	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004252 serine-type endopeptidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000496s00030950.1	PF13180.1	PDZ_2	319	400	3.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.667
SRR1783600	control	1.724
SRR1783602	moderate drought stress	1.674
SRR1811619	moderate drought stress	1.506

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.490
DRR006520	Root Summer glycyrrhizin high producing strain	2.367
DRR006521	Root Winter glycyrrhizin high producing strain	0.305
DRR006522	Root Winter glycyrrhizin high producing strain	0.405
DRR006523	Root Summer glycyrrhizin low producing strain	2.397
DRR006524	Root Summer glycyrrhizin low producing strain	2.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.321

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.243
SRR2868004	Drought Stress (root)	2.810
SRR2967015	Control (root)	3.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.007
SRR9715740	Leaf	11.768
SRR9715741	Leaf	5.547
SRR9715739	Root	0.464
SRR9715742	Root	0.895
SRR9715743	Root	0.720

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.385
SRR8749028	MeJA induced 9h	1.568
SRR8749029	MeJA induced 9h	1.347
SRR8749030	Uninduced	0.663
SRR8749031	Uninduced	0.358
SRR8749032	Uninduced	0.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.882
SRR8400027	Control - Root	3.454