Gene detail

Gene detail information of Glyur000496s00030947.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G69670.1	cullin 3B
NR	XP_006603864.1	PREDICTED: cullin-3A-like isoform X1 [Glycine max]
Swissprot	tr\|Q9C9L0\|CUL3B_ARATH	Cullin-3B
trEMBL	tr\|I1N643\|I1N643_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G02540.1}

Sequence

Transcript Sequence

>Glyur000496s00030947.1
CTTAAAATCAAGTCCTCATAGTTCTAAGTAAAAACCTTGGGAGAGGTGTTGAGGTAAACAGTATTACTGACTTACTAGTTACTACCACCATTCACATACATCTCCCCTTTCTCCAATTTCATTTCTTCTGTTTTTCACTTTTTCTTTTGCTTCATTTCTCAAAAATCCCTATCTTACCAAATGAAACCCTAATCTCTCCAATTCCTCTGCACGTTGCTTCTAGGGTTCGTCTTCCCCTCACGATTCCTCCAAATTCGTTGCTTCCACCGTTCCGTTTCGCCCTCAATCGCGTTTGAATTGAGGCTTTTTTCGGTGTTCGATTATCGCAGGGTTTGAATTTCGTGGTTTCGTTAGGGTTTTCGCGGAACGATGAGCACGCAGAAGAAGAGAGCGTTCCAGATAGAGGCGTTCAAGCACCGCGTGGTGGTCGATCCCAAGTACGCTGAGAAGACGTGGAAGGTTCTAGAACATGCAATTCACGAGATATACAACCACAATGCTAGTGGCCTTAGCTTTGAAGAGCTTTATAGAAATGCATATAACATGGTGCTACACAAATTTGGGGAGAAACTTTACTCAGGACTAGTGANGACCATGACTTCTCATCTTAGAGAAATTTCTGAATCGATTGAATCTGCTCAAGGAGAAGTTTTCTTGGAGGAGCTCAACAGGAAGTGGGTAGACCATAACAAGGCTTTGCAAATGATCCGAGACATACTGATGTACATGGATCGAACTTTCATACCAAGCAACCATAAAACCCCTGTTCATGAGCTTGGTTTGAATCTTTGGAGAGATGTTGTGATCCATTCCAACAAAACTCAGACTAGGCTTTTAGATACACTTCTTGAGCTTGTGCTTAGAGAAAGGAATGGTGAAGTGATAAATAGAGGCTTGATGAGAAATATAATAAAGATGCTAATGGATTTGGGTTTGTCTGTTTACCAGAAGGACTTTGAGAAGCATTTTCTTGAAGTTTCNGCAAATTTTTACTGTCTCGAGTCCCAGAAATTCATTGAATCTTGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTTTAAATGAAGAAACGGAGAGAGTGTCTCACTACTTGGATCCTAGAAGTGAGTCAAAGATAACTAGTGTGGTGGAGAAGGAGATGATTGAAAATCATATGCACACTCTAGTACATATGGAGAACTCAGGCCTAGTTAATATGCTCTTGGATGACAAATATGAGGACTTGGGAAGACTGTACAGCTTATTTCACAGGGTGCCTTCTGGGCTCACAATTGTTAAAGAAGTCATGACTTCTTTTACACGGGATACGGGTAAGCAGCTAGTTATGGATCCTGAAAGGTTGAAAGATCCNGTGGATTTTGTGCAACGTCTCTTGGATTTGAAGGATAAATATGACAAGGTTATTACTATGGCATTTAACAATGACAAGACATTTCAGAATGCCTTGAATTCCGCATTTGAATATTTCATCAATTTGAATGCTCGGTCTCCAGAGTTCATTTCTTTGTTTGTGGATGACAAACTTCGCAAAGGGTTGAAAGGGGTTGGNGAGGAGGATGTGGAGGTTGTATTAGACAAAGTCATGATGCTTTTCCGGTACCTACAAGAGAAGGATGTGTTTGAGAAGTATTACAAGCAACACTTAGCAAAAAGGCTTCTTTCTGGGAAGACTATATCTGATGATGCAGAAAGAAGCTTGATTGTTAAGCTAAAAACAGAGTGTGGATATCAGTTCACATCTAAGTTAGAGGGTATGTTTACAGACATGAAGACTTCTCATGATACGATGCAAGGTTTCTATTCATGNCATGGTGCTGAGTTGGGAGATAGCCCTACGCTATCTGTCCAGGTGCTTACAACAGGTTCATGGCCAACTCAACCTAGCCCTCAGTGTAATCTTCCAACAGAAATCCTGGGTGTTTGCGATAAGTTCCGGGCTTATTATCTTGGCACCCACAATGGTAGGAGATTGTCCTGGCAAACCAATATGGGGACAGCTGATTTAAGGGCAACATTTGGTAAGGGCCAGAAGCATGAGCTGAATGTTTCCACATACCAGATGTGTGTACTCATGCTCTTCAACAATGCTGACCGGTTGACCTGTAAGGAGATAGAGCAGGCTACAGCAATACCCATGTCAGACTTAAGGAGGTGCCTTCAGTCTCTGGCCTGTGTCAAAGGAAAAAACGTTCTTCGGAAAGAGCCAATGAGCAAGGACATAGCTGAGGATGATGCATTCTTCTTCAATGACAAGTTCACATGCAAGTTCTTCAAGGTAAAGATAGGGACTGTTGTTGCACAGAGGGAGTCAGAACCAGAAAATCTAGAAACCCGGCAAAGAGTGGAAGAAGACAGAAAGCCACAGATTGAGGCAGCAATTGTGAGGATAATGAAATCNAGAAGGACTCTAGATCATAATAACATCGTTGCTGAGGTCACAAAGCAGCTGCAGTCACGGTTTTTGCCTAATCCTGTTGTTATTAAAAAACGGATTGAATCCCTCATTGAGCGTGAGTTTTTGGAGAGGGATAAAGTGGACAGAAAACTGTATCGCTATCTTGCTTGAACAGCATGTGCTTTTATCTCTCTCTGTCAAAACGATTGATTTTATCATCATTCATGNGACTTATGTGATTTTGTGTCTGTCATGAGTTTGAGTGCTCATCACAAATTGCTGCAAGTAGAGCCTCTCACCCTTGCATAGTCAACAAACACCTAGGCTTGTTAGGGTCACTTCTCTCCAGGCTGCAAAACGTTTAGAATTTCTTTAGCTTCTTACATTTCTCAGCGACAATAAACTGAATATATTTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00496	36381	40404	+

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000496s00030947.1	PF00888.17	Cullin	29	632	1.00E-188
Glyur000496s00030947.1	PF10557.4	Cullin_Nedd8	660	726	3.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.100
SRR1783600	control	13.182
SRR1783602	moderate drought stress	12.169
SRR1811619	moderate drought stress	12.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.912
DRR006520	Root Summer glycyrrhizin high producing strain	19.953
DRR006521	Root Winter glycyrrhizin high producing strain	18.499
DRR006522	Root Winter glycyrrhizin high producing strain	17.941
DRR006523	Root Summer glycyrrhizin low producing strain	16.426
DRR006524	Root Summer glycyrrhizin low producing strain	16.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.591
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.540

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.902
SRR2868004	Drought Stress (root)	28.932
SRR2967015	Control (root)	26.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.433
SRR9715740	Leaf	14.065
SRR9715741	Leaf	15.464
SRR9715739	Root	4.248
SRR9715742	Root	14.967
SRR9715743	Root	14.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.512
SRR8749028	MeJA induced 9h	20.757
SRR8749029	MeJA induced 9h	11.502
SRR8749030	Uninduced	13.884
SRR8749031	Uninduced	11.969
SRR8749032	Uninduced	10.252

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.502
SRR8400027	Control - Root	22.544