Gene detail

Gene detail information of Glyur000496s00030944.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28860.1	0	ATP binding cassette subfamily B19
NR	XP_003543769.1	0	PREDICTED: ABC transporter B family member 19-like isoform X1 [Glycine max]
COG	YP_003134859.1	2.00E-124	ABC-type multidrug transport system, ATPase and permease component [Saccharomonospora viridis DSM 43017]
Swissprot	tr\|Q9LJX0\|AB19B_ARATH	0	ABC transporter B family member 19
trEMBL	tr\|I1LWJ6\|I1LWJ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G05300.1}

Sequence

Transcript Sequence

>Glyur000496s00030944.1
AATTTGCAACCACAGTTAAAAATCGTTTCACACTATAAAGCCAGCCACACACACCTCTCTCTCTTCCCAAACTCATGTTCTCTCCATTTCTTCCTTTGACCACTGGCCAACAACACCTCACTCACTCATCACACTCTCTCCTCTTCTCTATCAAAGGAAGTTACATAGAACCTGGTGTAGTGTAGTGTAGTAGTGTCTCGAGTTGCTAAAAACAAAAAAAAAACGACATTGACACTTCCTTCACTGCAAAAGGGATTGTATCAGATCTCCTTCATTCAATGCCCAGAAAACATTTAACACCCTTTAAGCCTTGGATCTCTTTCTTGATGGCATTGAGCCACGAGGCACACTAAAAAAAAATCCCATTCTTTTTTTGTTTTTTTGAAGCTTAAGTCACATACCCTTTATCAAAAAGACTTGTGTTTTTGGCTTTTTGAAGTGGTGGGGTTGTTGTTGTTGTTCTCTTCATGATGGCTGAAGCTGGTGCTGGTGAGCCTAAAGCATTGCCTGAAGCAGAGAAGAAGAAGGAGCAGAGCTTACCCTTTTACCAGCTCTTCTCATTTGCTGACAAGTATGATTGGATGCTCATGATCTCTGGGAGCATAGGTGCCATTGTTCATGGCTCATCCATGCCTGTTTTCTTCCTCCTCTTTGGTGAAATGGTTAATGGTTTTGGGAAAAACCAAATGGATTTGAAGAAAATGACAGAAGAAGTCTCCAAGTATGCTCTTTACTTTGTGTACCTTGGCCTTGTTGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGNGAGAGGCAAGTGAGCACACTGAGGAAGAAGTACTTAGAGGCAGTGCTTAAACAGGACGTTGGTTTCTTTGACACAGATGCAAGAACAGGAGATATTGTTTTCAGTGTCTCCACAGATACACTCCTTGTTCAAGATGCTATCAGTGAGAAGGTGGGAAACTTCATACATTATCTATCAACATTTCTGGCGGGTCTTGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCGCTTCTAAGTGTAGCAGTGATTCCTGGGATTGCTTTTGCTGGTGGCTTGTATGCTTACACCCTCACTGGCCTCACCTCAAAGAGTCGTGAATCCTATGCAAATGCTGGCATAATTGCTGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGTGAGAGTAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACACTGAAGCTTGGATACAAGGCAGGGATGGCTAAAGGTTTGGGTCTAGGATGCACATATGGGATAGCTTGCATGTCATGGGCACTAGTTTTCTGGTATGCTGGAGTTTTTATTAGGAATGGACAAACTGATGGAGGCAAGGCATTCACAGCTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGTCAGTCATTCTCAAACTTGGGTGCTTTCAGCAAAGGCAAAGCAGCTGGATACAAGTTGATGGAAATCATCAGGCAAAAGCCAACCATAGTGGAAGATCCATCAGATTGCAAGTGCTTACCTGAGGTTAATGGCAACATTGAGTTTAAGGATGTAACTTTCAGCTACCCATCAAGGCCAGATGTGATCATCTTCCGCAATTTCTCAATCTTTTTCCCTGCCGGAAAAACCGTNGCGGTTGTTGGCGGTAGCGGATCCGGAAAGAGCACCGTTGTTTCCTTGATTGAGAGGTTCTATGATCCAAATGAAGATCATATTAAAATGGCTAAGCAGGTTCTGCTGGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGCGATCAAATCGGGTTGGTGAATCAAGAACCTGCACTCTTTGCAACCACCATTCTTGAGAACATACTCTATGGAAAGCCTGATGCAACTATTGCTGAAGTGGAAGCTGCAGCTTCTGCTGCAAATGCTCATAGCTTTATCACCTTGCTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGCGTGCAATTATCCGGTGGCCAGAAGCAGAGAATCGCGATTGCCAGAGCTATGTTGAAAAACCCGAAGATCCTTCTCTTAGATGAAGCAACCAGTGCTCTTGATGCAGGATCCGAGAGCATTGTTCAGGAGGCGCTAGACCGGCTCATGGTCGGTAGAACAACCGTAGTTGTTGCACATCGCTTATCGACCATAAGGAATGTTGACACCATTGCGGTCATACAACAAGGGCAAGTTGTTGAGACAGGAACACATGAAGAGCTGATTGCCAAGGCAGGTGCCTATGCCTCACTAATTAGGTTCCAAGAGATGGTTGGGAATAGAGACTTCTCCAACCCTTCTACTCGCCGGAACCGCTCGTCGCGGTTGAGCCATTCGCTGTCAACAAAGTCCTTAAGCCTAAGGTCCGGAAGCTTGAGGAACTTGAGCTACCAGTACAGCACCGGAGCCGATGGCCGCATTGAGATGATCTCGAATGCCGAGACAGACAAGAAGAATCCGGCTCCTGAAGGGTACTTCTTCCGCCTGCTCAAGTTGAATGCTCCTGAGTGGCCTTACTCAATCATGGGAGCTGTTGGATCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCTATTGTCATGAGCAACATGATTGAGGTGTTTTACTATAGAAACTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTTTTCATATACATTGGTGCTGGTCTCTATGCAGTTGGTGCTTACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGGCTTGCCACTGATGCAGCTGATGTGAAGTCTGCTATTGCTGAGAGGATATCAGTGATTCTGCAGAACATGACATCTCTCCTCACTTCCTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCCTTGCTCATCCTTGCAACCTTCCCTCTTCTTGTTCTAGCTAATTTTGCTCAGCAACTATCTCTTAAAGGGTTTGCTGGAGACACAGCAAAGGCACATGCAAAGACGAGCATGATTGCAGGGGAGGGAGTAAGCAATATTAGAACAGTTGCAGCATTCAATGCTCAGAACAAGATGTTGTCCATTTTCTGCCACGAGCTCCGTGTCCCGCAGAGCCAGAGCCTGCGCCGGAGCCAAATGTCAGGCCTCTTGTTCGGCCTCTCTCAGCTCGCCCTCTATGCGTCCGAGGCTCTCATTCTATGGTACGGCGCGCATTTGGTGAGCAGAGGCGCTTCNACCTTCTCAAAGGTCATCAAGGTGTTTGTGGTCCTTGTGATCACGGCGAATTCGGTGGCAGAAACCGTGAGCCTCGCGCCTGAGATAATCCGCGGTGGCGAGGCCGTTGGTTCTGTGTTCTCAATTCTTGACCGCGCGACTCGGATTGATCCTGATGATCCTGATGCTGAGCCGGTTGAATCGCTTCGTGGGGAGATTGAACTGAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATCTCAGCATTAGAATTCGCGCGGGCCAGAGCCAGGCTCTTGTTGGGGCGAGCGGGTCAGGGAAGAGTTCTGTTATCGCACTGATCGAGCGATTCTACGATCCGATTGCCGGTAAAGTCATGGTGGATGGGAAGGACATTAGGAAATTGAACTTGAAATCATTAAGGCTTAAAATTGGTTTGGTGCAACAAGAGCCTGCACTGTTTGCAGCCAGCATCTTTGACAACATTGCATATGGCAAGGAAGGTGCAACAGAAGCCGAAGTAATTGAGGCGGCTCGCGCGGCCAATGTGCACGGATTCGTGAGCAGTTTGCCTGAAGGGTACAAGACACCGGTCGGCGAGAGAGGCGTGCAGCTCTCTGGTGGACAGAAGCAAAGGATTGCAATTGCAAGGGCTGTTCTGAAGGACCCCACAATACTTCTACTTGATGAGGCAACAAGTGCACTTGATGCCGAATCCGAGTGTGTCCTACAAGAAGCCTTGGAGAGGCTAATGCGGGGCCGAACCACCGTGCTCGTGGCTCATCGTTTGTCAACCATCAGAGGGGTAGATTGCATTGGTGTGGTTCAAGATGGGCGCATTGTTGAGCAAGGAAGCCATTCTGAACTTATCAGCAGGCCAGAAGGAGCATATTCTAGACTCTTGCAGCTACAACATCATCACATATGATATGTGAGAGAGGAAGAGATTTTTAATTTGATAAAAAAAAGTATATGATCTTGTGGGTTGATAATTATGTTTCAGGTCCCATTAACCTCATGCTTTGATTTTTCCTTTTTAATTAGATGTAGATATGTGGCTATATGAG

Protein Sequence

>Glyur000496s00030944.1
MMAEAGAGEPKALPEAEKKKEQSLPFYQLFSFADKYDWMLMISGSIGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIRQKPTIVEDPSDCKCLPEVNGNIEFKDVTFSYPSRPDVIIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEDHIKMAKQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATIAEVEAAASAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVGNRDFSNPSTRRNRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPEGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSIFCHELRVPQSQSLRRSQMSGLLFGLSQLALYASEALILWYGAHLVSRGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRATRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLSIRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVIEAARAANVHGFVSSLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00496	10505	20082	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000496s00030944.1	PF00664.18	ABC_membrane	47	318	2.10E-48
Glyur000496s00030944.1	PF00005.22	ABC_tran	384	538	5.30E-31
Glyur000496s00030944.1	PF00664.18	ABC_membrane	694	969	5.60E-48
Glyur000496s00030944.1	PF00005.22	ABC_tran	1035	1183	1.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.398
SRR1783600	control	0.384
SRR1783602	moderate drought stress	0.729
SRR1811619	moderate drought stress	0.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.521
DRR006520	Root Summer glycyrrhizin high producing strain	3.438
DRR006521	Root Winter glycyrrhizin high producing strain	0.228
DRR006522	Root Winter glycyrrhizin high producing strain	0.223
DRR006523	Root Summer glycyrrhizin low producing strain	1.132
DRR006524	Root Summer glycyrrhizin low producing strain	1.110
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.351
SRR2868004	Drought Stress (root)	21.374
SRR2967015	Control (root)	25.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.586
SRR9715740	Leaf	7.909
SRR9715741	Leaf	17.879
SRR9715739	Root	0.618
SRR9715742	Root	5.144
SRR9715743	Root	4.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.428
SRR8749028	MeJA induced 9h	1.288
SRR8749029	MeJA induced 9h	0.698
SRR8749030	Uninduced	0.123
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.167

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.522
SRR8400027	Control - Root	10.134