Gene detail information of Glyur000495s00023467 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31160.1 | 6.00E-60 | Protein of unknown function (DUF640) |
| NR | XP_010906808.1 | 2.65E-88 | PREDICTED: LOW QUALITY PROTEIN: protein G1-like4 [Elaeis guineensis] |
| Swissprot | tr|O82268|LSH3_ARATH | 9.00E-85 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 |
| trEMBL | tr|A0A078JW20|A0A078JW20_BRANA | 4.00E-91 | BnaCnng65050D protein {ECO:0000313|EMBL:CDY69731.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00495 | 105447 | 107283 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000495s00023467.1 | PF04852.7 | DUF640 | 15 | 141 | 7.30E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.513 |
| SRR1783600 | control | 38.167 |
| SRR1783602 | moderate drought stress | 33.256 |
| SRR1811619 | moderate drought stress | 33.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 128.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 131.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.844 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 109.689 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.045 |
| SRR2868004 | Drought Stress (root) | 0.065 |
| SRR2967015 | Control (root) | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 10.119 |
| SRR9715742 | Root | 14.819 |
| SRR9715743 | Root | 18.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.014 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.260 |
| SRR8400027 | Control - Root | 2.236 |