Gene detail

Gene detail information of Glyur000495s00023466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04420.1	5.00E-164	NAD(P)-linked oxidoreductase superfamily protein
NR	XP_003590003.1	0	Aldo-keto reductase [Medicago truncatula]
COG	YP_007123111.1	5.00E-114	oxidoreductase, aryl-alcohol dehydrogenase like protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|O23016\|KCAB_ARATH	3.00E-24	Probable voltage-gated potassium channel subunit beta
trEMBL	tr\|G7I4M8\|G7I4M8_MEDTR	0	Aldo/keto reductase family oxidoreductase {ECO:0000313\|EMBL:AES60254.1}

Sequence

Transcript Sequence

>Glyur000495s00023466.1
ATGGCCTTCTTCTTATCCTCTTCTTCTTCCTGTAACATTGGTTGTGCCCTTTCTCACTCTCTCACACCTTCATTGCCTCCTCTCAACACTACTACTTCTACTACTACTGCACTTCCAAGAACAACAAAAAGAAGAAGAAGGAGTAGAACTCTGATGACCTTTGGGGAACAGAACAATGAGAAAGAATCTCACGACATTCTCAATTATGCATTTGAGCATGGCATTAATGCTCTCGATACTGCTGAGGCCTACCCAATTCCAATGAAGAAAGAGACACAAGGAAAAACTGATCTCTATATCAGTAGCTGGCTGAAGTCTCAACCTCGNGACAAGATTATTTTAGCAACAAAAGTGTGTGGTTATTCTGAGAGGTCCAGTTACTTACGTGACAACGCAAGCATTTTGCGGGTTGATGCTGTAAATATCAAAGAAAGTGTGGAGAAAAGCCTTAAGCGTCTTGGCACTGATTATATTGATTTGTTGCAAATTCACTGGCCAGATCGCTACGTTCCATTGTTTGGTGATCTTTCCTATGATTCATCAAAATGGAGGCCTAGTGTGCCGTTTGTTGAGCAATTGCAAGCTTTTCAAGAACTTATCAATGAAGGAAAGGTACGCTACATAGGTGTTTCAAATGAGACTTCATATGGAGTTATGGAGTTTGTCCATGCAGCTAAAGTCGGGGGACTTCCAAAGATTGTCAGTATTCAAAACTGCTATAGCCTAGTTGCAAGATGTCGTTTTGAAGTTGATCTTGTGGAAGTTTGCCATCCAAAGAATTACAATATTGGCTTGCTAGCCTATTCCCCACTTGGAGGTGGATCACTCACTGGAAAATATATAGATATAAATTCTGAAGCTGCAAAAAGAGNAAGGTTCAACCTCTTCCCTGGCTATATGGAAAGATATAACAAATCGGTGGCACGGGAAGCAACTATAAAGTACCTTGAGTTGGCCAAGAAGCATGGTCTAACTCCGGTTCAGCTCTCGCTCGGATTCGCAAGAGACCGTCCATTCATGACAAGTTCAATTATAGGTGCAACTTCTGTGGACCAACTAAAAGAAGACATTGATGCTTTTACGACAACTGAGAGGCCTTTACCAGCAGAAGTCATGGCAGACATTGAAGCTGTTTTCAAGAGATACAAAGATCCTTCCATTCTTTAAAAGATTATACCCCTCAATATTTTTTTAATTTTGGATTATTAAATCATTGCAATTGATTTATTCTGTTACCCATTTCACACTCTCTTTTTGTTGCCATGATTAAAAATTAGAGGATGGATACATATTGAACCAATATACATGAAAACTAAGTTGTGCAAAAAAACCTTTGAACCCCCTCTTCTTTTATAGAGAAAACTATAGCAACTATGTTATGTGGATGGACTTTACTTGTGGGACATTGATTCGGAACTCGTTTGTAATACCTTGTGGCCAGGTATATAGTCATAGATGATGATCTTTGATAATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00495	94009	98768	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000495s00023466.1	PF00248.16	Aldo_ket_red	52	379	2.80E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.282
SRR1783600	control	3.404
SRR1783602	moderate drought stress	2.744
SRR1811619	moderate drought stress	2.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.850
DRR006520	Root Summer glycyrrhizin high producing strain	3.094
DRR006521	Root Winter glycyrrhizin high producing strain	1.908
DRR006522	Root Winter glycyrrhizin high producing strain	1.856
DRR006523	Root Summer glycyrrhizin low producing strain	1.290
DRR006524	Root Summer glycyrrhizin low producing strain	1.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.967
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.183

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.518
SRR2868004	Drought Stress (root)	3.343
SRR2967015	Control (root)	2.356

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.621
SRR9715740	Leaf	32.973
SRR9715741	Leaf	14.767
SRR9715739	Root	0.704
SRR9715742	Root	1.509
SRR9715743	Root	1.165

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.359
SRR8749028	MeJA induced 9h	8.791
SRR8749029	MeJA induced 9h	11.845
SRR8749030	Uninduced	12.125
SRR8749031	Uninduced	17.774
SRR8749032	Uninduced	11.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.009
SRR8400027	Control - Root	10.224