Gene detail

Gene detail information of Glyur000495s00023462.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43330.1	3.00E-172	Lactate/malate dehydrogenase family protein
NR	AFK38114.1	0	unknown [Lotus japonicus]
COG	YP_003118637.1	2.00E-119	malate dehydrogenase [Catenulispora acidiphila DSM 44928]
Swissprot	tr\|O48905\|MDHC_MEDSA	0	Malate dehydrogenase, cytoplasmic
trEMBL	tr\|I3SCX2\|I3SCX2_LOTJA	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}

Sequence

Transcript Sequence

>Glyur000495s00023462.1
CATTTATATAATCTTTCCTTTTTTCTAGTTGTGCCCCGTAAACCTAACAAAGCGGTGTCGTTTCATGTCGTCATACTCAGCGTGGCAACACTATCTTCACATAAATAAATACCCAAAGTCCACCCACGCCACCACATCACTCTCACACACACTTCCTCTCTCAAACACTGTTCTTCTTATCCGCTCCCCAAACTTCTCTGTTCGATTCCATTTCATTTCTTCGAAATGGCCAAGGACCCAGTTCGTGTTCTCGTCACTGGTGCTGCTGGGCAAATTGGTTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCTGTGATCCTCCACATGCTTGACATTCCTCCCGCAGCCGAGTCATTGAATGGGGTTAAAATGGAGCTGGTTGATGCTGCATTCCCTCTTCTTAAAGGCGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGAGTGAACATTGCAGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGTCTAAGAATGTCTCTATTTATAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTGGTTGTTGCTAACCCAGCAAACACCAATGCATTGATATTGAAGGAATTTGCTCCATCTATTCCTGAGAAAAACATCACTTGTTTGACTAGACTGGATCACAATAGGGCACTGGGCCAAATTTCTGAAAGACTGAACTTTCAAGTTTCTGATGTAAAGAATGTCATAATCTGGGGCAATCATTCATCAACTCAGTATCCTGATGTCAACCATGCAACTGTTAAAACTCCAGCTGGGGAGAAGCCTGTCCGTGAACTTGTTGCTGATGATGCCTGGTTGAATGGAGAATTCATCACTACTGTTCAACAACGTGGTGCTGCAATTATAAAGGCTAGAAAGCTTTCAAGTGCACTATCTGCTGCTAGTGCTGCTTGTGACCACATCCGAGATTGGGTTCTTGGAACTCCTGAGGGTACCTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTACCAGCTGGACTGATCTATTCATTCCCTGTCACCTGTGCCAGTGGGGAATGGAAAATAGTTCAAGGACTTTCAATTGATGAGTTCTCAAGGAAAAAGTTGGACTTGACAGCAGAAGAGCTTTCCGAGGAAAAGGCTTTGGCTTACTCATGCCTCTCTTAGGCTGTGCTTACTTTTTGTCTACTGTGGTTGCAGGTTCCCATGTTTTCTCTATAGAAGTAGCCTCAATTTTGAATAATGCTCCTTCTAGATACAGAGGAAGAACTATCAGTGTCTCTTATCTTTGGAATTATACTTGTATTGCAACATCTAATCCTTTTGGAGGATATTTGTGCTCACGGGTTTTAGTCATGTCATGGTGATAGACCATGGGCCGAATGCTAAATTGGATTAGGACTAATTTTACGTTAATTAATGCCCATTGTTTAGGGCTTGAAGAACAACTCTTTGGTGTGTTTGTGGTGGATGTACAAGAATTTTGATGTTTGTTGGGACTGCACAAGCGTGCATGCAAACGCATACATCTATTCCTTGTGATTGAGTATTATGCAATTGTATTGCAAAATAAGGCCATCATCATGAATTGTTATATTACAAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00495	64128	67860	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00025	MDH1	EC:1.1.1.37	Carbon metabolism	map01200
			Citrate cycle (TCA cycle)	map00020
			Pyruvate metabolism	map00620
			Glyoxylate and dicarboxylate metabolism	map00630
			Carbon fixation in photosynthetic organisms	map00710
			Cysteine and methionine metabolism	map00270
			Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006108 malate metabolic process

GO:0019752 carboxylic acid metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0016491 oxidoreductase activity

GO:0016615 malate dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060 L-malate dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000495s00023462.1	PF00056.18	Ldh_1_N	6	153	1.40E-32
Glyur000495s00023462.1	PF02866.13	Ldh_1_C	157	325	1.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	141.928
SRR1783600	control	142.728
SRR1783602	moderate drought stress	82.238
SRR1811619	moderate drought stress	81.904

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	114.241
DRR006520	Root Summer glycyrrhizin high producing strain	113.075
DRR006521	Root Winter glycyrrhizin high producing strain	82.965
DRR006522	Root Winter glycyrrhizin high producing strain	81.049
DRR006523	Root Summer glycyrrhizin low producing strain	74.542
DRR006524	Root Summer glycyrrhizin low producing strain	74.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	128.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	127.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	442.243
SRR2868004	Drought Stress (root)	304.662
SRR2967015	Control (root)	292.652

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	258.104
SRR9715740	Leaf	242.259
SRR9715741	Leaf	287.536
SRR9715739	Root	147.642
SRR9715742	Root	142.485
SRR9715743	Root	135.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	134.152
SRR8749028	MeJA induced 9h	101.769
SRR8749029	MeJA induced 9h	87.643
SRR8749030	Uninduced	24.549
SRR8749031	Uninduced	15.971
SRR8749032	Uninduced	37.667

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	175.121
SRR8400027	Control - Root	145.729