Gene detail information of Glyur000494s00017415 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03170.1 | 9.00E-37 | FASCICLIN-like arabinogalactan-protein 11 |
| NR | KHN05734.1 | 4.06E-128 | Fasciclin-like arabinogalactan protein 11 [Glycine soja] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-43 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|K7LTF6|K7LTF6_SOYBN | 2.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G07430.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 154645 | 155367 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000494s00017415.1 | PF02469.17 | Fasciclin | 31 | 165 | 2.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 121.309 |
| SRR1783600 | control | 120.312 |
| SRR1783602 | moderate drought stress | 148.269 |
| SRR1811619 | moderate drought stress | 142.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.551 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.021 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.711 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.449 |
| SRR2868004 | Drought Stress (root) | 82.281 |
| SRR2967015 | Control (root) | 60.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.966 |
| SRR9715740 | Leaf | 3.728 |
| SRR9715741 | Leaf | 0.404 |
| SRR9715739 | Root | 56.272 |
| SRR9715742 | Root | 201.681 |
| SRR9715743 | Root | 162.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.145 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.082 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 263.190 |
| SRR8400027 | Control - Root | 382.528 |