Gene detail information of Glyur000494s00017414 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 2.00E-48 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | XP_003606406.1 | 6.62E-106 | Fasciclin-like arabinogalactan protein [Medicago truncatula] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-64 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|G7JPE8|G7JPE8_MEDTR | 2.00E-106 | Fasciclin-like arabinogalactan protein {ECO:0000313|EMBL:AES88603.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 151688 | 153194 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000494s00017414.1 | PF02469.17 | Fasciclin | 56 | 189 | 3.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.350 |
| SRR1783600 | control | 32.420 |
| SRR1783602 | moderate drought stress | 23.715 |
| SRR1811619 | moderate drought stress | 22.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.861 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 67.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.708 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.947 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 70.190 |
| SRR2868004 | Drought Stress (root) | 40.559 |
| SRR2967015 | Control (root) | 35.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.011 |
| SRR9715740 | Leaf | 6.195 |
| SRR9715741 | Leaf | 2.420 |
| SRR9715739 | Root | 11.652 |
| SRR9715742 | Root | 29.152 |
| SRR9715743 | Root | 24.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.029 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.108 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.968 |
| SRR8400027 | Control - Root | 42.481 |