Gene detail information of Glyur000494s00017413.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07980.1 | 2.00E-22 | nuclear factor Y, subunit C10 |
| NR | XP_003606405.1 | 1.27E-61 | DNA polymerase epsilon subunit [Medicago truncatula] |
| Swissprot | tr|Q8LCG7|NFYC2_ARATH | 1.00E-08 | Nuclear transcription factor Y subunit C-2 |
| trEMBL | tr|G7JPE7|G7JPE7_MEDTR | 5.00E-62 | Nuclear transcription factor Y subunit C7 {ECO:0000313|EMBL:AFK49676.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 145827 | 149063 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000494s00017413.1 | PF00808.18 | CBFD_NFYB_HMF | 94 | 156 | 3.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.300 |
| SRR1783600 | control | 8.551 |
| SRR1783602 | moderate drought stress | 11.233 |
| SRR1811619 | moderate drought stress | 11.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.546 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 72.446 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 70.418 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.297 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.586 |
| SRR2868004 | Drought Stress (root) | 37.250 |
| SRR2967015 | Control (root) | 30.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.608 |
| SRR9715740 | Leaf | 20.815 |
| SRR9715741 | Leaf | 12.254 |
| SRR9715739 | Root | 0.815 |
| SRR9715742 | Root | 6.591 |
| SRR9715743 | Root | 5.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.638 |
| SRR8749028 | MeJA induced 9h | 32.641 |
| SRR8749029 | MeJA induced 9h | 67.865 |
| SRR8749030 | Uninduced | 20.691 |
| SRR8749031 | Uninduced | 9.504 |
| SRR8749032 | Uninduced | 15.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.203 |
| SRR8400027 | Control - Root | 31.020 |