Gene detail

Gene detail information of Glyur000494s00017412.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28470.2	0	beta-galactosidase 8
NR	KHN38778.1	0	Beta-galactosidase 8 [Glycine soja]
COG	YP_003160083.1	2.00E-54	beta-galactosidase [Jonesia denitrificans DSM 20603]
Swissprot	tr\|Q9SCV4\|BGAL8_ARATH	0	Beta-galactosidase 8 (Precursor)
trEMBL	tr\|I1LL69\|I1LL69_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000494s00017412.1
ATTCATTCTTCCTTTCTTCTTTCTTGTTTGTTTTTGTTTGTTCTAAATGCTTAGAAAGCCCAAAAAGGCAATGAGAGCGACACAGATTCTTCTGTTGGTTTTGGTTTGGTTCCTCGGCGTTTATGTCCCTTCTACTCTTTGTGCCAATGTCACCTATGACCACCGAGCATTGGTAATCGATGGCAAGCGCAGGGTCTTGGTCTCTGGTTCCATTCACTACCCTCGTAGCACCCCAGAGATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGTGGACTTGATGTGATTGAGACCTATGTNTTCTGGAACTTGCACGAACCAGTTCGAGGCAAGTATAATTTTGAAGGCAGGGGGGACTTGGTTAAATTTGTGAAGGCGGTAGCAGCAGCAGGTCTATATGTGCATCTCCGGATTGGTCCCTATGCATGTGCTGAATGGAACTACGGTGGTTTCCCTCTTTGGCTGCATTTTATTCCGGGAATTCAGTTCAGAACTGATAATGAACCATTCAAGGCAGAAATGAAGCGGTTTACTGCTAAGATTGTGGATATGATGAAGCAAGAGAACCTCTATGCGTCACAAGGAGGACCTATTATTTTATCTCAGATTGAAAATGAGTATGGGAACATTGATTCAGCCTATGGTCCTGCTGGTAAATCCTACATCAAGTGGGCAGCATCAATGGCTACATCTCTTGATACAGGGGTTCCCTGGGTTATGTGCCAGCAGGCAGATGCACCTGATCCAATTATTAACACATGCAATGGATTTTACTGCGATCAATTCACGCCAAACTCTAACAAGAAACCAAAAATGTGGACTGAGAATTGGAGCGGATGGTTTCTTTCATTTGGAGGTGCTGTGCCTTACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGNTTTTACCAGCGAGGTGGAACTCTTCAGAATTACTACATGTACCATGGAGGGACTAACTTTGGCCGGACAACTGGTGGACCTTTCGTTTCTACTAGTTATGATTATGATGCACCCATTGATGAGTATGGAATTATTAGACAGCCTAAATGGGGCCACCTTAAAGATGTGCATAAGGCCATAAAGCTTTGTGAAGCAGCATTGATCGCTACTGATCCAACAAGTACATCTCTTGGTCCAAATCTAGAGATTAATTCTGCATCTATGATTTCAAGCTTCACAACTGAATCTTTAAAGGAAGAGGTTGGTTCTTTGGACGGTTCAAGCTCAGGATGGAGTTGGATTAGTGAACCTATTGGTATTTCAAAGGCTGATTCGTTCTCAAAAGTTGGATTACTGGAGCAAATAAATACGACAGCTGATAGAAGTGATTACTTGTGGTACTCGTTAAGTATTGATGCTGAAGATAATGTTGGTGCTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCCCTCCATGCTTTTGTAAATGGGAAGCTTGCAGGGAGTGGAGCAGGCAACAGTGGCAAAGCTAACGTCAATGTGGACATCCCCATCACACTTGTGGCTGGAAAGAACACAATTGATCTCCTGAGTTTAACAGTGGGACTACAGAACTATGGAGCATTTTTTGACACATGGGGTGCGGGGATCACTGGTCCAGTAACATTGAAAGGTTTGAAAAATGGCAGTACTCTTGATCTCTCCTCGAGGCAGTGGACATATCAGGTTGGCCTTAAAGGAGAAGATTTAGGTCCATCTAGTGGCAGTTCTGGACAGTGGAATTCACAATCCACCTTACCTACAAACCAACCTTTGACTTGGTACAAGACAAACTTTGATGCTCCCTCTGGCAGTAACCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGGCGATACTGGCCTACATATGTCTCTCCAAATGGTGGTTGTACCGACTCATGCAATTATAGGGGGTCCTATAGTTCATCCAAATGTCTCAAGAACTGTGGGAAACCATCACAGACANTATACCATGTTCCACGGTCGTGGTTGCAACCAGACAGCAACACTCTTGTACTGTTTGAGGAAAGCGGAGGCAACCCTACAAAAATCTCTTTTGCTACAAAACAGATAGAAAGCGTGTGTTCACATGTATCTGAATCTCACCCTCCACCTGTAGACTCNTGGAATTCAGATACCGAATCAGGAAGAAAAGTAAGTCCTATACTGTCACTGGAGTGCCCTTATCCTAACCAGGTGATCTCTTCCATTAAATTCGCAAGCTTTGGAACNCCTCATGGGACTTGCGGAAACTTCAACCATGGACGCTGCAGCAGCAATAGAGCTCTATCCATTGTGCAGAAGGCCTGCGTTGGATCAAGCAGTTGTAGTATTGGAGTATCAATTAATACATTTGGAAATCCATGTAAAGGAGTGCAAAAGAGTTTAGCTGTTGAAGCTGCTTGTACATAGGCATGNCGCTTCTAGAGCGCTCCCCAAGTATTGTTAATTGCCAAAGTATGACGGCATTATAGTAGTAAACCCGGGGGGTAAAAATGTCAAGCAAAGTAGTGCATTGTTAATTGCAATAAAAAAAAGATTAAGAAAAAGAAAAGTCTCTGGTGCCTATGTGTTATGGTGGTATTCTTTTTACTAGAAAGGATGGTTTCTAACTTTCTAGTAGATGTCAAACATAAAATGAGTATTTACGTAAAAGTGATATAGACTAAGACCAGGCATACATCAGCATTTTCACGGTGCTGTCTGGGGTGGACCACCTATTAGGTGGTTCACCATGAGGAAGTTATTGCAAAAGTTATTCTTAACCCTTCGATTTATTAAAAAACCAATCAAAAGCCCAAATGAAATGATAACAAAAGTGAGAACATCTACACTTTCCCTCACATAACCCTTCCTCCCTCTCTTCTTCATCGTCATCCATGGTCATGGGTGAGAAGAAACCAGCAGAGAAGGAGCTCGCACATGAAGTTCCTAGACCCGCTTCATACAACAAGAAGCATACCTCTCGCGAGATCTAGACCGACATCCGCCTCCTCCTCTTTGAAAATTTNGCCAAGCATGCTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00494	125781	132163	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000494s00017412.1	PF01301.14	Glyco_hydro_35	42	346	2.00E-119
Glyur000494s00017412.1	PF02837.13	Glyco_hydro_2_N	422	525	8.50E-06
Glyur000494s00017412.1	PF02140.13	Gal_Lectin	717	794	8.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.922
SRR1783600	control	2.943
SRR1783602	moderate drought stress	1.766
SRR1811619	moderate drought stress	1.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.564
DRR006520	Root Summer glycyrrhizin high producing strain	3.609
DRR006521	Root Winter glycyrrhizin high producing strain	1.737
DRR006522	Root Winter glycyrrhizin high producing strain	1.667
DRR006523	Root Summer glycyrrhizin low producing strain	9.077
DRR006524	Root Summer glycyrrhizin low producing strain	8.930
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.996
SRR2868004	Drought Stress (root)	10.457
SRR2967015	Control (root)	11.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.552
SRR9715740	Leaf	0.160
SRR9715741	Leaf	0.298
SRR9715739	Root	0.751
SRR9715742	Root	3.853
SRR9715743	Root	3.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.935
SRR8749028	MeJA induced 9h	1.458
SRR8749029	MeJA induced 9h	2.008
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.150
SRR8749032	Uninduced	0.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.711
SRR8400027	Control - Root	5.517