Gene detail

Gene detail information of Glyur000494s00017410

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60520.1	3.00E-121	Late embryogenesis abundant (LEA) protein-related
NR	XP_007132238.1	0	hypothetical protein PHAVU_011G077800g [Phaseolus vulgaris]
trEMBL	tr\|V7AF79\|V7AF79_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04232.1}

Sequence

Transcript Sequence

>Glyur000494s00017410.1
CTCATATATAGAAAGAAACTGTTTAAACGGCAAGTTAGTGTGGTGTTAACTTGGTCAATAAATCTCGTTGGCACTTCAAGAATTCAGCTTTTGAATAGCCCTCGNATCACTATACCAAGCAACCACAAACTTTTGCTGCGTTTGGAAAAGAGATACCAGCATAGCTTAAGCCGAACTTCTGGGTCAATTACTTGCATACATACCAAATTCCTCTATAAATATATTCTCTTCACTACCTTTCTTCTCCATCGANCTATCCTCTGCGTCATTGAATCGAAGCAGTTGAAAAAAAAAACACTAAATTAAGCAGAGGAAAAAGAAACAAAGTCAAGGTTTCAAATTAATATAGCATTACACAGAGATCACCAAGATGGCTGGAAGAAAGTGGAGCATCTTGGTGGCCTTCTTCATCTTACTTATCTCTATGGAAGCTGCCATTGCTCAAGCTCAAGGAAACGGTAACGGTAACGGTAACGGTAACGGCAATGGCAATGGCAACGGCAACGGTAATGGAGACGAAAAGGGCAATGGAGACGAAAAGGGCAATGGTGAGGGAAAGGATAAGGAGAAAGGGAAGGAAAAGGAGAAAAAGCCAAAGAAGAATAAGCCACGTGACGAATCATCAGATTATGATAAGTTGGAAACCCTGCCATCAGGACAGGAACGAGGTTTCTGCACGGCAAACACTTCCTGCCACTTCAAGACCCTCGTGTGTCCTGAAGAGTGTAAAAAGAGGAAGCCCAAGAAGAACAAGAAGGAGAAAGGATGCTTCATCGACTGCAGCAGCAAATGTGAAGCCACTTGCAAGTTTAGAAGAGCCAACTGTGATGGGTATGGTTCTCTGTGTTACGATCCTCGCTTCGTTGGTGGTGATGGTGTGATGTTCTACTTCCACGGCGCCAAAGGAGGAAACTTTGCCATTGTTTCTGATGATGAGTTCCAGATCAATGCCCACTTCATTGGTACTCGGCCTCAGGGAAGGACTCGTGACTATACATGGGTGCAGGCACTTGCTGTCTTGTTTGATACACACACACTCGTTATTGCAGCCAATAGAGTGACTCAGTGGGATGACAGTGTTGACTCTCTCACAGTGAAGTGGGATGNTGAATTGGTCAGCATTCCTACTGATGGAGAAGCTGAATGGAGGGCCAATGGTGATGAGAGAGAAGTGGTTGTGGAGAGAACCGATGATTCCAACAGTGTGAGAGTGACAGTTTCGGGTTTGCTTGAAATTGACATAAGGGTAAGGCCCATTGGAGAGAAAGAGAACAAGGTTCACAATTACCAGTTGCCATCAGGTGATGCTTTTGCTCATTTGGAGACACAATTCAGGTTTAAGAAACACACAGATAATATTGAAGGAGTTTTGGGTCAGACTTATAGGCCAGGGTATGTTAGCCCTGTGAAGAGAGGGGTTGCTATGCCAATGATGGGAGGGGAGGATAAGTACCAGATTCCCTCTCTCTTTTCAACATCATGCAACCTCTGCAGGTTCCACAGGCCTTCATCATCAGGGGCTGCTAGTGCTACCAGTGAAGGGATAATTGCTCAGTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00494	122650	124674	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000494s00017410.1	PF06830.6	Root_cap	320	376	5.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.129
SRR1783600	control	0.139
SRR1783602	moderate drought stress	0.463
SRR1811619	moderate drought stress	0.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.208
DRR006520	Root Summer glycyrrhizin high producing strain	0.207
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	0.495
DRR006524	Root Summer glycyrrhizin low producing strain	0.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.708
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.653

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	318.178
SRR2868004	Drought Stress (root)	133.727
SRR2967015	Control (root)	106.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.101
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.037
SRR9715739	Root	0.095
SRR9715742	Root	0.117
SRR9715743	Root	0.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.479
SRR8749028	MeJA induced 9h	1.116
SRR8749029	MeJA induced 9h	1.657
SRR8749030	Uninduced	0.578
SRR8749031	Uninduced	0.769
SRR8749032	Uninduced	0.256

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.363
SRR8400027	Control - Root	2.037