Gene detail

Gene detail information of Glyur000494s00017409.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60550.1	1.00E-158	geminivirus rep interacting kinase 2
NR	XP_004505984.1	0	PREDICTED: serine/threonine-protein kinase GRIK2-like [Cicer arietinum]
COG	YP_006403390.1	7.00E-28	serine/threonine protein kinase [Sulfurospirillum barnesii SES-3]
Swissprot	tr\|Q5HZ38\|GRIK2_ARATH	0	Serine/threonine-protein kinase GRIK2
trEMBL	tr\|V7AF83\|V7AF83_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04237.1}

Sequence

Transcript Sequence

>Glyur000494s00017409.1
CTTCTATCCAGATCTCAACGATCCTTTTTCCTTCCCTCACCGCCCCAATTATTTAATTTTTTAATATTATTATTACTGAATTCATTTATCACATCTAGGGTTTCTCGATTCAGTTACCATTTTCGTTTTCCGCGATTGGATTTACGAGTTAGGGTTTCTGGGCCTCGAAAGACCCTCGATTCGTGCTGGAATTCTAGGTTTTATTGGAGCTGGGGTGGCAGGGCTATCCCAGTTTGTCATTCTCGCCCACAAAAAGAAGGTCAACGAATTGTTCGTGTGGGCTGAGCCTGCAACGATTGTTATAAACTGGAGTTATCACAATGTTGGGTGTGAATCGTAGTAGTGGTTTCAATATCTCAAGCCGTATTCTCCACTTAGCTGAATGGCACCCTTTAGAATAGCAGTGTTGAGTAGGGCCTGAAGCCCTCTTCCTTCCTCTGAAATCAGATTTTCAACTTCTTTAGGCTGACAGATACCTCAATCACCTTTAAAGTCTAAGCTCCAGATGTTCAATAAGACTCTTTCTTTTGCTAAAGCCATGGGTTGCTGTAACTGCTTCGGGTTCATCAGGAGCCAGAACCATCGAAGTGCTAAGCCTGCAGTCAACAATAATCTGTCCCAGGCACTGTTGTTTGATGATTATGACATTGAAGATGAAGAGCCCTCCTATAATGATGAGGTTACTAACAACACTAGTGGAGATGATAGTGAGGTGCAAACTCGTCCCAAGCGATCGGAAGAAATTTTGAACTTGAGAGTAGAGAATGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTCACAAAGTTCTTCGCACGGAGGATGAAAACGGAAACAAGATGATAAATGAGTATGTTCGTGAGTATAAAATTGGTTCTGGTAGCTATGGGAAAGTGGCTCTTTACCGAAGCCGTGTTGATGGAAACCATTATGCAATTAAGGCCTTTCATAAATCTCATTTACTGAAGCTTCGAGTTGCACCATCAGAAACTGCCATGACTGATGTTCTACGTGAGGTTTTCATCATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCTGATCACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCCGCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGGGATATAGTTTCTGGATTAACATATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCTGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGACAATGATATGCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCTGAATGTATTTTAGGTCTTACCTACCATGGTAAAGCTGCTGACACGTGGGCTGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCGTTAGTACTCCCAAAAGATATGAATCCACAGTTGAGGCACTTAATAGAAGGACTACTTTTCAAAGACCCAAGACTAAGGATGACATTGGGTGATGTTGCGGAGGATAGCTGGGTTATTGGAGATGATGGGCCTATTCCGGAGTATCTTTGTTGGTGCAAAAGNAAGATTTTCGAGAGGGAAGACAATGATGAGAGCAATATGCTTCCCTGATCTATAATACCGGCTAAATTTATTTTTAGGTTGCATTTGTTTTATGTACAGTGGAAAAATCCCAGATATTATTTTTCCCCGTTTGACTATTCGCCTGGATNGTATGATTATAGAGGTAGGCTTGAAGGAAAATGTGGCTCATGCAGGCATAATTAGTAGCAAAGGCTTGTGTATTTTAGTGTGAAATCATTTGTTTGATTTGATGTCTTGGAACTTAGGGGTCTTGTATTCGGCTCTATACACGCACAGAATGATGAGTTTTGAGCTTCTGCTTCTAGGCATAGATGCTGAATTTAAACTCCAGTGTATGTATTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00494	114246	119208	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000494s00017409.1	PF00069.20	Pkinase	120	378	2.90E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.119
SRR1783600	control	21.227
SRR1783602	moderate drought stress	17.797
SRR1811619	moderate drought stress	17.814

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.487
DRR006520	Root Summer glycyrrhizin high producing strain	27.214
DRR006521	Root Winter glycyrrhizin high producing strain	23.177
DRR006522	Root Winter glycyrrhizin high producing strain	22.644
DRR006523	Root Summer glycyrrhizin low producing strain	19.837
DRR006524	Root Summer glycyrrhizin low producing strain	19.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.815
SRR2868004	Drought Stress (root)	37.227
SRR2967015	Control (root)	34.769

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.318
SRR9715740	Leaf	23.848
SRR9715741	Leaf	21.599
SRR9715739	Root	8.584
SRR9715742	Root	15.423
SRR9715743	Root	16.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.424
SRR8749028	MeJA induced 9h	27.135
SRR8749029	MeJA induced 9h	31.367
SRR8749030	Uninduced	18.228
SRR8749031	Uninduced	16.783
SRR8749032	Uninduced	15.616

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.537
SRR8400027	Control - Root	34.476