Gene detail

Gene detail information of Glyur000494s00017405

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60590.2	5.00E-80	DHBP synthase RibB-like alpha/beta domain
NR	XP_004505988.1	1.88E-143	PREDICTED: yrdC domain-containing protein, mitochondrial-like [Cicer arietinum]
COG	YP_006705471.1	5.00E-25	YrdC domain-containing protein [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
trEMBL	tr\|V7AFE6\|V7AFE6_PHAVU	4.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:ESW04244.1}

Sequence

Transcript Sequence

>Glyur000494s00017405.1
ATGAACATATCCATATCCATACAAGGACGGCTTCTTCTCAACGCTGCCCTCTTCCCAAATCTCTCCTTTCGAGGGTTCCGCAGGTTGGCACTTGTTCCACGTTTGCAACAGAGTCAAGTGATCAGAAGGGGTTTCACCAAAAACGTGGCTTGGAGTATGGATAGTGGTGACTTGGGTCTTGAAGTCAAGGTTGGGGTGGTTCACCCAGCAACAGATGGTTATGCTGCTGAGGCAGTTGAAGCTTTGAAAGCTGGGAAGGTCATTGCAGTACCCACTGATACACTATATGGATTTGCCTGTGATGCTTGCTCAATGGAAGCAGTTAACAGGATTTATGAGATTAAAGGCCGTAAACATACAAGCCCGCTAGCTATTTGTGTTAGTGATGTATCAGACATAGACCGAGAGTCAAGTGTTCTTGAAAGATCTTTGAACCCAGGATTGGATAGTATAGGAGTCAGAGTGCCTGATTGCAATTTCATCAGGATCATTGCCCGTGGTTCAGGAACTGCCCTGGCCCTTACCAGTGCAAACCTAAGTGGACAACCAAGTAGTGTTTGCATCAAGGATTTCGAGAAACTGTGGGAACACTGTGCTTTTGTTTATGATGGTGGTTTGCTTCCATCAGGTCGTGCCGGTTCAACAGTTGTCGACCTCACTACACCACACAAATACAAGATACTTAGACCTGGAAGTGCAAAGGAAGAGACAGTTGCCATCTTGCAGAAGCATTCTTTTGTGGAGGCATTGTGACCACTTAAATTAGCTGCGATCCATCTGCAGTGTCATGTTCTAGGCTTAACTGTTTCACTTGCAAAAATCAATTCTTTCGCTTGGACATGTGAGAAACTATCTCCAAGCCAACTTCTTTCCGTTAAACTGTCCATTACTGCCACAAGATCTCTGGTGTGCTTGGACATACATTCGACATTATTGGAAACAGAGATATATGTTACCTTTGAGTTGCACTAGGCTCTGTGTCACATGATTTAAAAGCTTGTTATATTCTGTAATAATTTAATCTGTTTTGAGAAATTGGAATAATGGTGTCCATTGATACTTCAAACATTGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00494	90102	95078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003725 double-stranded RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000494s00017405.1	PF01300.13	Sua5_yciO_yrdC	80	136	5.30E-18
Glyur000494s00017405.1	PF01300.13	Sua5_yciO_yrdC	140	231	3.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.850
SRR1783600	control	1.855
SRR1783602	moderate drought stress	2.686
SRR1811619	moderate drought stress	2.349

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.772
DRR006520	Root Summer glycyrrhizin high producing strain	2.688
DRR006521	Root Winter glycyrrhizin high producing strain	6.840
DRR006522	Root Winter glycyrrhizin high producing strain	6.491
DRR006523	Root Summer glycyrrhizin low producing strain	4.026
DRR006524	Root Summer glycyrrhizin low producing strain	4.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.676
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.544

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.923
SRR2868004	Drought Stress (root)	7.418
SRR2967015	Control (root)	8.472

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.460
SRR9715740	Leaf	45.417
SRR9715741	Leaf	16.874
SRR9715739	Root	2.746
SRR9715742	Root	1.694
SRR9715743	Root	2.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.910
SRR8749028	MeJA induced 9h	6.695
SRR8749029	MeJA induced 9h	9.113
SRR8749030	Uninduced	5.094
SRR8749031	Uninduced	4.470
SRR8749032	Uninduced	3.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.508
SRR8400027	Control - Root	5.276